Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

26953425 .. 26957052

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCGTCGTCGTCTTCGCGTCGCAAACTGAAACGATTTTCCGAGAGAGAGAAAGAGGGTCTCAGACACGCGCACAGAAAGCTCGGAGTTCGAGTCAGAGAGAGAAACAAGGGTAGATTGGGACACCACAAGCAAAAGTGGACGTCGGAGGAGGAAGCTGCCCTAGTCGCCGGAGTTGCGAAGCACGGCGCCGGCAAATGGAAGAACATCCTCAAAGACCCAGAATTCGCACAACCTCTCAGTCTCCGCTCCAACATTGACCTCAAGGATAAATGGAGGAACATGAGTCCTAGCCTTGGACAAGTTACTAAGAAGAAGAGGAAGAATCCGAAGAGTTCATTTCGTTTCACTGTACCTTCTCTTTCACGTCCTAGTGGAACATCTCGAAATGTTGTCATTGATTCTAAGACTGAAGAAAGGTACAAAGCATTGATTTTTGAGGCCCTTTTAACAATGAAAGATCCCGATGGATCTGATGTAGGTGCTATTCGTGACTTTATTCAGCAAAGGGATGAGGAGCCCACTCCACAAAATTTCAAAAGAGTAGTGGGTGCAAGATTGAGAAGTCTTGTTTCACTAGGAAAACTTGAGAAGACCAGCAATGGCTTCAAGATCAAAGAACACTCAATTGTAGGAACAAAAACCCCTAGTGAGATGGCGACTTCTACTGAAACAGAAGATGATGCTGTTCATATTACTGCCTATATAATTGCTGATGCTGAAAATAAATCATTCTTGGCTGCTGAAGCGATGGAGGAGGCAGAGAGAGTTTCAAAGATTGCAGAAGAGACCGAGTCTATGCTACTGCTAGTGAAAGAGATCAATGAACAATGTTTACGTGGTGAGGTTGTCGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.33

Weight (kDa)

9.66

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_CHD1_Hrp3	PF23588	41 - 76	2.3e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain
Myb_DNA-binding	PF00249	44 - 94	5.2e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	140 - 203	8.8e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	2 cut(s)	19, 71
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	455, 478
AcsI	RAATTY	2 cut(s)	224, 532
AcuI	CTGAAG	2 cut(s)	432, 765
AcyI	GRCGYC	2 cut(s)	143, 189
AfaI	GTAC	2 cut(s)	354, 422
AfiI	CCNNNNNNNGG	2 cut(s)	198, 296
AgsI	TTSAA	3 cut(s)	538, 610, 774
AjiI	CACGTC	1 cut(s)	368
AluBI	AGCT	2 cut(s)	82, 158
AluI	AGCT	2 cut(s)	82, 158
Alw26I	GTCTC	3 cut(s)	65, 248, 782
AlwI	GGATC	2 cut(s)	455, 478
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	158, 740
ApoI	RAATTY	2 cut(s)	224, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	2 cut(s)	73, 191
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	2 cut(s)	6, 599
BbvI	GCAGC	2 cut(s)	145, 727
BccI	CCATC	3 cut(s)	461, 649, 745
BceAI	ACGGC	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	65, 248, 782
BfaI	CTAG	6 cut(s)	164, 291, 372, 578, 648, 809
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	2 cut(s)	159, 741
BlsI	GCNGC	2 cut(s)	160, 742
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	190, 519
BmsI	GCATC	2 cut(s)	673, 706
BpiI	GAAGAC	2 cut(s)	6, 599
BpuEI	CTTGAG	2 cut(s)	248, 608
BsaAI	YACGTR	1 cut(s)	839
BsaHI	GRCGYC	2 cut(s)	143, 189
BsaI	GGTCTC	2 cut(s)	65, 782
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 296
Bse118I	RCCGGY	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	207, 517
BseLI	CCNNNNNNNGG	2 cut(s)	198, 296
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	76, 253
BseRI	GAGGAG	3 cut(s)	164, 530, 770
BseXI	GCAGC	2 cut(s)	145, 727
Bsh1236I	CGCG	2 cut(s)	19, 71
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	171, 192
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	198, 296
BsmAI	GTCTC	3 cut(s)	65, 248, 782
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	2 cut(s)	65, 782
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	460, 470, 612, 819
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	75, 252
BspFNI	CGCG	2 cut(s)	19, 71
BspLI	GGNNCC	2 cut(s)	190, 519
BspPI	GGATC	2 cut(s)	455, 478
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	65, 782
BsrBI	CCGCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	4 cut(s)	460, 470, 612, 819
BssNI	GRCGYC	2 cut(s)	143, 189
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	3 cut(s)	311, 326, 780
BstACI	GRCGYC	2 cut(s)	143, 189
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	5 cut(s)	62, 239, 309, 405, 861
BstF5I	GGATG	2 cut(s)	207, 517
BstFNI	CGCG	2 cut(s)	19, 71
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	73, 191
BstKTI	GATC	4 cut(s)	463, 473, 615, 822
BstMAI	GTCTC	3 cut(s)	65, 248, 782
BstMBI	GATC	4 cut(s)	460, 470, 612, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 167, 176, 746
BstUI	CGCG	2 cut(s)	19, 71
BstV1I	GCAGC	2 cut(s)	145, 727
BstV2I	GAAGAC	2 cut(s)	6, 599
BstX2I	RGATCY	2 cut(s)	460, 470
BstYI	RGATCY	2 cut(s)	460, 470
BsuRI	GGCC	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	764
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	207, 517
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	73, 191
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	353, 421
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	82, 158, 294, 443, 520, 606, 740, 860
CviKI_1	RGCY	8 cut(s)	82, 158, 294, 443, 520, 606, 740, 860
CviQI	GTAC	2 cut(s)	353, 421
DdeI	CTNAG	5 cut(s)	62, 239, 309, 405, 861
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	4 cut(s)	462, 472, 614, 821
DpnII	GATC	4 cut(s)	460, 470, 612, 819
Eam1104I	CTCTTC	3 cut(s)	311, 326, 780
EarI	CTCTTC	3 cut(s)	311, 326, 780
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	2 cut(s)	65, 782
Eco57I	CTGAAG	2 cut(s)	432, 765
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	522
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	286
FaiI	YATR	5 cut(s)	284, 693, 705, 707, 800
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	159, 741
FokI	GGATG	2 cut(s)	194, 524
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	159, 741
FspBI	CTAG	6 cut(s)	164, 291, 372, 578, 648, 809
GlaI	GCGC	2 cut(s)	72, 190
GluI	GCNGC	2 cut(s)	159, 741
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	2 cut(s)	171, 192
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	2 cut(s)	73, 191
Hin1I	GRCGYC	2 cut(s)	143, 189
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	71, 189
HinP1I	GCGC	2 cut(s)	71, 189
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	5 cut(s)	93, 286, 325, 401, 794
HpaII	CCGG	2 cut(s)	171, 192
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	3 cut(s)	141, 836, 853
Hpy188I	TCNGA	7 cut(s)	43, 65, 86, 98, 148, 330, 475
Hpy188III	TCNNGA	4 cut(s)	384, 464, 491, 610
Hpy8I	GTNNAC	3 cut(s)	141, 836, 853
Hpy99I	CGWCG	4 cut(s)	10, 13, 24, 148
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	143, 367, 838
HpyCH4V	TGCA	2 cut(s)	554, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 167, 176, 746
HpyF3I	CTNAG	5 cut(s)	62, 239, 309, 405, 861
HpySE526I	ACGT	3 cut(s)	143, 367, 838
Hsp92I	GRCGYC	2 cut(s)	143, 189
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	71, 189
KasI	GGCGCC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	460, 470, 612, 819
LmnI	GCTCC	2 cut(s)	254, 517
LpnPI	CCDG	4 cut(s)	184, 205, 234, 610
Lsp1109I	GCAGC	2 cut(s)	145, 727
LweI	GCATC	2 cut(s)	673, 706
MaeI	CTAG	6 cut(s)	164, 291, 372, 578, 648, 809
MaeII	ACGT	3 cut(s)	143, 367, 838
MaeIII	GTNAC	2 cut(s)	304, 491
MalI	GATC	4 cut(s)	462, 472, 614, 821
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	4 cut(s)	460, 470, 612, 819
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	460, 470
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	4 cut(s)	224, 532, 627, 708
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	102, 295, 803
MmeI	TCCRAC	2 cut(s)	126, 276
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	1 cut(s)	449
MspI	CCGG	2 cut(s)	171, 192
MunI	CAATTG	1 cut(s)	627
MvnI	CGCG	2 cut(s)	19, 71
MwoI	GCNNNNNNNGC	4 cut(s)	79, 167, 176, 746
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	4 cut(s)	460, 470, 612, 819
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	190, 519
NmuCI	GTSAC	1 cut(s)	491
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	325, 401
PflFI	GACNNNGTC	1 cut(s)	793
PkrI	GCNGC	2 cut(s)	160, 742
PleI	GAGTC	3 cut(s)	101, 294, 802
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	3 cut(s)	101, 294, 802
Ppu21I	YACGTR	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	190, 519
PspPI	GGNCC	1 cut(s)	442
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PsuI	RGATCY	2 cut(s)	460, 470
PsyI	GACNNNGTC	1 cut(s)	793
RsaI	GTAC	2 cut(s)	354, 422
RsaNI	GTAC	2 cut(s)	353, 421
SalI	GTCGAC	1 cut(s)	851
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	159, 741
Sau3AI	GATC	4 cut(s)	460, 470, 612, 819
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	3 cut(s)	102, 295, 803
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	673, 706
SfoI	GGCGCC	1 cut(s)	190
SmlI	CTYRAG	2 cut(s)	263, 587
SmoI	CTYRAG	2 cut(s)	263, 587
Sse9I	AATT	4 cut(s)	224, 532, 627, 708
SsiI	CCGC	1 cut(s)	247
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	6 cut(s)	164, 291, 372, 578, 648, 809
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	3 cut(s)	146, 370, 841
TaqI	TCGA	3 cut(s)	91, 385, 852
TaqII	GACCGA	1 cut(s)	806
TasI	AATT	4 cut(s)	224, 532, 627, 708
TfiI	GAWTC	2 cut(s)	325, 401
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	158, 740
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	4 cut(s)	327, 470, 680, 840
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	793
XapI	RAATTY	2 cut(s)	224, 532
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	6 cut(s)	164, 291, 372, 578, 648, 809
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.