Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017523.1

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

12316 .. 15383

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017523.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgggctggagacaaattaaagggtccagttcagaccatacccgtagagcaaaaccagtcgcggcagtcttcgataccgaaatttcaaacacagagccggagccacaaaagatgggaaatccgaagcaaaaatggacgtcggaggaagaagaggcgctccgagccggcgtcagaaagcacggcaccggaaagtggaaggatatccagaaagaccccgagttcaaccccttcctctcctctcgctccaatattgatctcaaggacaaatggcggaatatgtctgttagtggtgtggggggtcccagagaaaaagcaaggatgagaccaagagatagtcctgttactctattctccaccccacagccttctgctgctgctcctgttaaacgtgacccagctgcagctcttctcaaacgtgagtcatcagcagctcctgtcaaacgcgaggcagcagcatctcttgtcaaaggcgagccagtagcagatgattccccaacagaagcaaaaactgaagcaaaaacagctccaatgtacaatgcaatgatttttgaagcactctctaactcaacagatccaaatggattggagactggtgctattgctaattttattgagcaaaggtatgttttggagaaaaagaatgaggtgccccaaaattttagaaggttattgagctcaaggttaagaaggctggttgcacaagaaaaacttgaaaaggtgattggttttgactctttcagctcgaagtatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

251

Amino Acids

27.94

Weight (kDa)

9.72

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	182, 646
AccII	CGCG	2 cut(s)	62, 444
AciI	CCGC	2 cut(s)	62, 271
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	2 cut(s)	81, 655
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	137, 168
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	87, 223, 551, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	6 cut(s)	398, 404, 431, 524, 675, 741
AluI	AGCT	6 cut(s)	398, 404, 431, 524, 675, 741
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	3 cut(s)	4, 316, 581
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	7 cut(s)	371, 374, 398, 401, 428, 449, 452
ApoI	RAATTY	2 cut(s)	81, 655
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	24, 299
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	24, 299
BaeGI	GKGCMC	1 cut(s)	651
BanI	GGYRCC	2 cut(s)	182, 646
BanII	GRGCYC	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	677
BbvI	GCAGC	7 cut(s)	358, 361, 385, 413, 440, 461, 464
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	4, 316, 581
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	158
BisI	GCNGC	8 cut(s)	63, 372, 375, 399, 402, 429, 450, 453
BlsI	GCNGC	8 cut(s)	64, 373, 376, 400, 403, 430, 451, 454
Bme18I	GGWCC	2 cut(s)	24, 299
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	24, 299
BmiI	GGNNCC	6 cut(s)	25, 102, 184, 300, 301, 648
BmsI	GCATC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	242, 661
BsaHI	GRCGYC	2 cut(s)	137, 168
BsaI	GGTCTC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	4 cut(s)	27, 56, 476, 595
Bse3DI	GCAATG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	546
BseNI	ACTGG	4 cut(s)	27, 56, 476, 595
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	7 cut(s)	358, 361, 385, 413, 440, 461, 464
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	62, 444
BshNI	GGYRCC	2 cut(s)	182, 646
BsiHKAI	GWGCWC	1 cut(s)	677
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	3 cut(s)	98, 165, 186
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	3 cut(s)	4, 316, 581
BsmFI	GGGAC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	651, 677
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	253, 571
BspACI	CCGC	2 cut(s)	62, 271
BspFNI	CGCG	2 cut(s)	62, 444
BspLI	GGNNCC	6 cut(s)	25, 102, 184, 300, 301, 648
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	2 cut(s)	182, 646
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	4 cut(s)	27, 56, 476, 595
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	2 cut(s)	253, 571
BssNI	GRCGYC	2 cut(s)	137, 168
Bst6I	CTCTTC	2 cut(s)	144, 411
BstACI	GRCGYC	2 cut(s)	137, 168
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	166, 473
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	2 cut(s)	62, 444
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	256, 574
BstMAI	GTCTC	3 cut(s)	4, 316, 581
BstMBI	GATC	2 cut(s)	253, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 521
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	2 cut(s)	62, 444
BstV1I	GCAGC	7 cut(s)	358, 361, 385, 413, 440, 461, 464
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	166, 473
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	24, 299
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	532
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	2 cut(s)	255, 573
DpnII	GATC	2 cut(s)	253, 571
Eam1104I	CTCTTC	2 cut(s)	144, 411
EarI	CTCTTC	2 cut(s)	144, 411
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	675
Eco24I	GRGCYC	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	24, 299
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	677
FaiI	YATR	3 cut(s)	39, 278, 624
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	1 cut(s)	285
Fnu4HI	GCNGC	8 cut(s)	63, 372, 375, 399, 402, 429, 450, 453
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	8 cut(s)	63, 372, 375, 399, 402, 429, 450, 453
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	8 cut(s)	63, 372, 375, 399, 402, 429, 450, 453
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	158
HapII	CCGG	3 cut(s)	98, 165, 186
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	2 cut(s)	137, 168
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	419, 488, 731
HpaII	CCGG	3 cut(s)	98, 165, 186
HphI	GGTGA	1 cut(s)	730
Hpy188I	TCNGA	5 cut(s)	34, 123, 142, 161, 173
Hpy188III	TCNNGA	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	190, 238, 375, 657, 681
HpyCH4IV	ACGT	3 cut(s)	137, 388, 415
HpyCH4V	TGCA	3 cut(s)	401, 539, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 521
HpySE526I	ACGT	3 cut(s)	137, 388, 415
Hsp92I	GRCGYC	2 cut(s)	137, 168
HspAI	GCGC	1 cut(s)	155
KflI	GGGWCCC	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	253, 571
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	6 cut(s)	100, 162, 248, 382, 436, 529
Lsp1109I	GCAGC	7 cut(s)	358, 361, 385, 413, 440, 461, 464
LweI	GCATC	1 cut(s)	464
MaeII	ACGT	3 cut(s)	137, 388, 415
MaeIII	GTNAC	2 cut(s)	340, 389
MalI	GATC	2 cut(s)	255, 573
MboI	GATC	2 cut(s)	253, 571
MboII	GAAGA	4 cut(s)	61, 158, 161, 398
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	2 cut(s)	651, 677
MluCI	AATT	4 cut(s)	15, 81, 604, 655
MlyI	GAGTC	2 cut(s)	428, 725
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	6 cut(s)	136, 145, 242, 247, 439, 637
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	3 cut(s)	18, 384, 683
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	98, 165, 186
MvnI	CGCG	2 cut(s)	62, 444
MwoI	GCNNNNNNNGC	2 cut(s)	161, 521
NaeI	GCCGGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	253, 571
NgoMIV	GCCGGC	1 cut(s)	164
NlaIV	GGNNCC	6 cut(s)	25, 102, 184, 300, 301, 648
NmuCI	GTSAC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	8 cut(s)	64, 373, 376, 400, 403, 430, 451, 454
PleI	GAGTC	2 cut(s)	427, 725
PpsI	GAGTC	2 cut(s)	427, 725
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	6 cut(s)	25, 102, 184, 300, 301, 648
PspPI	GGNCC	2 cut(s)	24, 299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	18, 384, 683
SatI	GCNGC	8 cut(s)	63, 372, 375, 399, 402, 429, 450, 453
Sau3AI	GATC	2 cut(s)	253, 571
Sau96I	GGNCC	2 cut(s)	24, 299
SchI	GAGTC	2 cut(s)	428, 725
SduI	GDGCHC	2 cut(s)	651, 677
SfaNI	GCATC	1 cut(s)	464
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	24, 299
SmlI	CTYRAG	2 cut(s)	257, 676
SmoI	CTYRAG	2 cut(s)	257, 676
Sse9I	AATT	4 cut(s)	15, 81, 604, 655
SsiI	CCGC	2 cut(s)	62, 271
SspI	AATATT	1 cut(s)	250
SstI	GAGCTC	1 cut(s)	677
TaiI	ACGT	3 cut(s)	140, 391, 418
TaqI	TCGA	2 cut(s)	72, 743
TasI	AATT	4 cut(s)	15, 81, 604, 655
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	18, 384, 683
Tru9I	TTAA	3 cut(s)	18, 384, 683
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	7 cut(s)	371, 374, 398, 401, 428, 449, 452
Tsp45I	GTSAC	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	24, 299
XapI	RAATTY	2 cut(s)	81, 655
ZraI	GACGTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.