Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

16491127 .. 16494589

Gene Structure 3463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1188600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGAAACCAAAAGCAAAAGTGGACGGCGGCGGAGGAAGAAGCCCTACTCGCCGGAGTAGCGAAGCACGGACCAGGCAAGTGGAAGAACATCATCAAAGATCCCGAATGCGCCCCTTTCCTAATTCACCGCTCCAATATCGACCTCAAGGATAAGTGGAGGAACTTGGGTGTTAATTCTTGTGGACATGGTTCTAAGGAAAGACCAAGGGCTACAAAGATTAGAAAGGTTGTGGGTACCCAGCATGACATTGTTCAGAGCCCTGCTTCTGCTGCTTCAGTTCGACCCAATGCATCTCTCGTTGCTGTCACGAACGATGCTTTGAGTACAGCATCTGATGGGAAAAATGCTCCAAGGTATGATGCAATGATTTTTGAGGCCCTTTTAACGATGAAAGATAAGGATGGATCTACTATAGGTGCCATTCTTAACTATATTGAGCAAAGGCATGAGGTGCCTGTACCAGCAAATTTCAGAAGGGTTTTGGGTACAAGGTTAAGACAGCTTGCTATGCAAGGAAAACTGGACAAGGCACAAAATGGTTACAAGATAAAAAAGGATGTAACTTTGGTAGCAGAAACACCTATATCTACTCCAGATCAAAAGGAAGTGAGGCCGTGGAAGTTGCAGAATTATGTGCCAATGATCTCTACCGAAACAGTGAAGGATGCAGCTGATAATGCTGCCTACAAACTCGTGGATGCTGATAACAAATGCTTTCTGGCTACTCAAGCAATGAAGGAAGCAGAAAGAGTTTCAATGATGGCAGAAGATACCGACTCAATGCTACTGTTAATGGAAGAGATTTATGAACAATGTTTGCGTGGTGAAGTCGTTGCCTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.19

Weight (kDa)

8.74

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	8.9e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	118 - 179	8.9e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	3 cut(s)	236, 419, 454
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	3 cut(s)	29, 32, 130
AclWI	GGATC	2 cut(s)	95, 415
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	238, 328, 462, 490
AgsI	TTSAA	1 cut(s)	759
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	505, 674
AluI	AGCT	2 cut(s)	505, 674
AlwI	GGATC	2 cut(s)	95, 415
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	378, 614
ApeKI	GCWGC	3 cut(s)	272, 671, 683
ApoI	RAATTY	1 cut(s)	469
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	71, 379
AsuHPI	GGTGA	2 cut(s)	119, 839
AvaII	GGWCC	1 cut(s)	71
BanI	GGYRCC	3 cut(s)	236, 419, 454
BanII	GRGCYC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	259, 670, 683
BccI	CCATC	3 cut(s)	332, 398, 757
BceAI	ACGGC	2 cut(s)	42, 601
BciT130I	CCWGG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	30, 273, 672, 684
BlsI	GCNGC	4 cut(s)	31, 274, 673, 685
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 379
BmiI	GGNNCC	3 cut(s)	238, 421, 456
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	131, 714
BsaJI	CCNNGG	4 cut(s)	206, 353, 617, 840
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	372, 741
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	206, 353, 617, 840
BseGI	GGATG	4 cut(s)	409, 565, 673, 706
BseMI	GCAATG	2 cut(s)	372, 741
BseNI	ACTGG	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	259, 670, 683
BseYI	CCCAGC	1 cut(s)	240
BshFI	GGCC	2 cut(s)	380, 616
BshNI	GGYRCC	3 cut(s)	236, 419, 454
BsiSI	CCGG	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	380, 616
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	4 cut(s)	100, 407, 598, 645
BspACI	CCGC	3 cut(s)	29, 32, 130
BspANI	GGCC	2 cut(s)	380, 616
BspLI	GGNNCC	3 cut(s)	238, 421, 456
BspPI	GGATC	2 cut(s)	95, 415
BspT107I	GGYRCC	3 cut(s)	236, 419, 454
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	372, 741
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	4 cut(s)	206, 353, 617, 840
BssMI	GATC	4 cut(s)	100, 407, 598, 645
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	3 cut(s)	206, 353, 840
Bst2BI	CACGAG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	661, 792
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	195, 846
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	409, 565, 673, 706
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	103, 410, 601, 648
BstMBI	GATC	4 cut(s)	100, 407, 598, 645
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	259, 670, 683
BstX2I	RGATCY	2 cut(s)	100, 407
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	2 cut(s)	100, 407
BsuRI	GGCC	2 cut(s)	380, 616
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	409, 565, 673, 706
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	71, 379
Csp6I	GTAC	4 cut(s)	237, 327, 461, 489
CviAII	CATG	3 cut(s)	188, 245, 449
CviJI	RGCY	9 cut(s)	44, 212, 261, 380, 505, 616, 674, 725, 845
CviKI_1	RGCY	9 cut(s)	44, 212, 261, 380, 505, 616, 674, 725, 845
CviQI	GTAC	4 cut(s)	237, 327, 461, 489
DdeI	CTNAG	2 cut(s)	195, 846
DpnI	GATC	4 cut(s)	102, 409, 600, 647
DpnII	GATC	4 cut(s)	100, 407, 598, 645
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	3 cut(s)	206, 353, 840
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	3 cut(s)	206, 353, 840
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	3 cut(s)	206, 353, 840
FaeI	CATG	3 cut(s)	191, 248, 452
FatI	CATG	3 cut(s)	187, 244, 448
Fnu4HI	GCNGC	4 cut(s)	30, 273, 672, 684
FokI	GGATG	4 cut(s)	416, 572, 680, 713
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	30, 273, 672, 684
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	30, 273, 672, 684
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	380, 616
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	191, 248, 452
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	119, 839
Hpy166II	GTNNAC	2 cut(s)	24, 185
Hpy188I	TCNGA	3 cut(s)	258, 337, 476
Hpy188III	TCNNGA	3 cut(s)	104, 310, 596
Hpy8I	GTNNAC	2 cut(s)	24, 185
HpyAV	CCTTC	3 cut(s)	471, 658, 733
HpyCH4III	ACNGT	2 cut(s)	661, 792
HpyCH4V	TGCA	5 cut(s)	293, 365, 514, 628, 671
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
HpyF3I	CTNAG	2 cut(s)	195, 846
Hsp92II	CATG	3 cut(s)	191, 248, 452
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	100, 407, 598, 645
LmnI	GCTCC	2 cut(s)	137, 355
Lsp1109I	GCAGC	3 cut(s)	259, 670, 683
LweI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
MaeIII	GTNAC	3 cut(s)	307, 542, 562
MalI	GATC	4 cut(s)	102, 409, 600, 647
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	100, 407, 598, 645
MboII	GAAGA	4 cut(s)	50, 97, 782, 812
MflI	RGATCY	2 cut(s)	100, 407
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	4 cut(s)	123, 175, 469, 631
MlyI	GAGTC	1 cut(s)	773
MnlI	CCTC	6 cut(s)	28, 153, 155, 370, 445, 606
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	5 cut(s)	174, 386, 429, 497, 794
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	50, 59, 272, 454, 511, 680, 731
NdeII	GATC	4 cut(s)	100, 407, 598, 645
NlaIII	CATG	3 cut(s)	191, 248, 452
NlaIV	GGNNCC	3 cut(s)	238, 421, 456
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	31, 274, 673, 685
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	238, 421, 456
PspPI	GGNCC	2 cut(s)	71, 379
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	100, 407
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	4 cut(s)	238, 328, 462, 490
RsaNI	GTAC	4 cut(s)	237, 327, 461, 489
SaqAI	TTAA	5 cut(s)	174, 386, 429, 497, 794
SatI	GCNGC	4 cut(s)	30, 273, 672, 684
Sau3AI	GATC	4 cut(s)	100, 407, 598, 645
Sau96I	GGNCC	2 cut(s)	71, 379
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	9 cut(s)	147, 231, 359, 421, 456, 497, 507, 586, 676
SfaNI	GCATC	6 cut(s)	302, 307, 341, 352, 658, 691
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	146, 729
SmoI	CTYRAG	2 cut(s)	146, 729
Sse9I	AATT	4 cut(s)	123, 175, 469, 631
SsiI	CCGC	3 cut(s)	29, 32, 130
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	3 cut(s)	206, 353, 840
TaaI	ACNGT	2 cut(s)	661, 792
TaqI	TCGA	2 cut(s)	141, 283
TasI	AATT	4 cut(s)	123, 175, 469, 631
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	5 cut(s)	174, 386, 429, 497, 794
Tru9I	TTAA	5 cut(s)	174, 386, 429, 497, 794
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	272, 671, 683
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	407, 752, 825
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.