Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Forward (+)

85483697 .. 85487749

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGACCAAGAGATAGTCCTGTTACTCTATTCTCCACCCCACAGCCTTCTGCTGCTGCTCCTGTGAAACGTGACCCAGCTGCAGCTCTTCTCAAACGTGAGTCATCAGCAGCTCCTGTCAAACGTGAGGCAGCAGCATCTCTTGTCAAAGGCGAGCCAGTAGCAGATGATTCCACAACAGAAGCAAAAACTGAAGCAAAAACAGCTCCAATGTACAATGCAATGATTTTTGAAGCACTTTCTAACTCAACAGATCCAAATGGATTGGAGACTGGTGCTATTGCTAATTTTATTGAGCAAAGGTATGTTTTGGAGAAAAAGAATGAGGTGCCCCAAAATTTTAGAAGGTTATTGAGCTCAAGGTTAAGAAGGCTGGTTGCACAAGAAAAACTTGAAAAGTTTCAAAATTGCTTCAAGATAAAAAGTGACTCGTCAGGTGAGACAAAAGCACCACCACCCCCAAAACAGAATGATGCACCACTGGCCCCAAACGCCCCAAAACAGAACGACACCCCAGCGGCCCCAAAACAGAATGATGTCCAACTTACGCAATTGCAGAGTCATGCTGATGTAATCCCCTATGAAACAGTTGAGGAAGCGGCAGTGGCTGCTGCCTACAAGATTGCCGAAGCAGAAAACAAATCATTTGTGGCTGCTGAAGCAGTGAAAGAGTCGGAGAGGGTTTCACAGATGTTTGAAGACACAAACTCAGTGCTTCAGTTGGCAGAAGAGTTTCTTAAGAAATGTTCGCAAGGTGAAGTTCTTCTGGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

258

Amino Acids

28.11

Weight (kDa)

5.53

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	70 - 135	2e-08	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	2 cut(s)	518, 599
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	3 cut(s)	213, 678, 701
AfaI	GTAC	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	5 cut(s)	233, 395, 404, 415, 698
AluBI	AGCT	5 cut(s)	80, 86, 113, 206, 357
AluI	AGCT	5 cut(s)	80, 86, 113, 206, 357
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	263, 434
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	2 cut(s)	116, 608
AoxI	GGCC	2 cut(s)	483, 519
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	3 cut(s)	399, 732, 762
AspS9I	GGNCC	2 cut(s)	484, 520
AsuHPI	GGTGA	2 cut(s)	449, 767
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	263, 434
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	484, 520
BmiI	GGNNCC	3 cut(s)	330, 486, 522
BmsI	GCATC	2 cut(s)	146, 463
BpiI	GAAGAC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	158, 277, 486
Bse3DI	GCAATG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	3 cut(s)	158, 277, 486
BseSI	GKGCMC	1 cut(s)	333
BseYI	CCCAGC	2 cut(s)	76, 514
BshFI	GGCC	2 cut(s)	485, 521
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	263, 434
BsnI	GGCC	2 cut(s)	485, 521
Bsp1286I	GDGCHC	2 cut(s)	333, 359
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	518, 599
BspANI	GGCC	2 cut(s)	485, 521
BspCNI	CTCAG	1 cut(s)	722
BspLI	GGNNCC	3 cut(s)	330, 486, 522
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	158, 277, 486
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	2 cut(s)	93, 723
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	709
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	263, 434
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 482, 491, 605, 608, 659
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	485, 521
BtsI	GCAGTG	2 cut(s)	609, 669
BtsIMutI	CAGTG	4 cut(s)	479, 609, 669, 717
Cac8I	GCNNGC	1 cut(s)	155
CaiI	CAGNNNCTG	2 cut(s)	116, 608
Cfr13I	GGNCC	2 cut(s)	484, 520
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	93, 723
EarI	CTCTTC	2 cut(s)	93, 723
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	3 cut(s)	213, 678, 701
EcoICRI	GAGCTC	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	1 cut(s)	566
FaiI	YATR	3 cut(s)	306, 564, 582
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 720, 752
FatI	CATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	359
GsaI	CCCAGC	2 cut(s)	80, 518
HaeIII	GGCC	2 cut(s)	485, 521
Hin1II	CATG	1 cut(s)	566
HinfI	GANTC	5 cut(s)	101, 170, 428, 559, 671
HphI	GGTGA	2 cut(s)	449, 767
Hpy188I	TCNGA	1 cut(s)	676
Hpy188III	TCNNGA	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	57, 339, 363
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	3 cut(s)	70, 97, 124
HpyCH4V	TGCA	5 cut(s)	83, 221, 380, 476, 556
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 482, 491, 605, 608, 659
HpyF3I	CTNAG	1 cut(s)	709
HpySE526I	ACGT	3 cut(s)	70, 97, 124
Hsp92II	CATG	1 cut(s)	566
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	3 cut(s)	64, 118, 211
LweI	GCATC	2 cut(s)	146, 463
MaeII	ACGT	3 cut(s)	70, 97, 124
MaeIII	GTNAC	3 cut(s)	22, 71, 425
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	80, 710, 740, 755
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	333, 359
MluCI	AATT	4 cut(s)	286, 337, 406, 551
MlyI	GAGTC	4 cut(s)	110, 422, 568, 680
MmeI	TCCRAC	2 cut(s)	565, 654
MnlI	CCTC	4 cut(s)	121, 319, 586, 672
MroXI	GAANNNNTTC	3 cut(s)	399, 732, 762
MseI	TTAA	2 cut(s)	365, 738
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	2 cut(s)	80, 518
MspCI	CTTAAG	1 cut(s)	737
MunI	CAATTG	1 cut(s)	551
MwoI	GCNNNNNNNGC	6 cut(s)	203, 482, 491, 605, 608, 659
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	3 cut(s)	330, 486, 522
NmuCI	GTSAC	2 cut(s)	71, 425
PciSI	GCTCTTC	1 cut(s)	93
PdmI	GAANNNNTTC	3 cut(s)	399, 732, 762
PfeI	GAWTC	1 cut(s)	170
PleI	GAGTC	4 cut(s)	109, 422, 567, 679
PpsI	GAGTC	4 cut(s)	109, 422, 567, 679
Psp124BI	GAGCTC	1 cut(s)	359
PspFI	CCCAGC	2 cut(s)	76, 514
PspN4I	GGNNCC	3 cut(s)	330, 486, 522
PspPI	GGNCC	2 cut(s)	484, 520
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	2 cut(s)	116, 608
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	365, 738
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	484, 520
SchI	GAGTC	4 cut(s)	110, 422, 568, 680
SduI	GDGCHC	2 cut(s)	333, 359
SfaNI	GCATC	2 cut(s)	146, 463
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	358, 737
SmoI	CTYRAG	2 cut(s)	358, 737
Sse9I	AATT	4 cut(s)	286, 337, 406, 551
SsiI	CCGC	2 cut(s)	518, 599
SstI	GAGCTC	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	3 cut(s)	73, 100, 127
TasI	AATT	4 cut(s)	286, 337, 406, 551
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	521, 602
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	365, 738
Tru9I	TTAA	2 cut(s)	365, 738
TscAI	CASTG	4 cut(s)	486, 609, 669, 717
TseFI	GTSAC	2 cut(s)	71, 425
Tsp45I	GTSAC	2 cut(s)	71, 425
TspDTI	ATGAA	1 cut(s)	597
TspRI	CASTG	4 cut(s)	486, 609, 669, 717
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	3 cut(s)	399, 732, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.