Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8254463.1

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 331

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8254463.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 254 bp

atgtctgttagtggtgtggggggtcccagagaaaaagcaaggatgagaccaagagatagtcctgttactctattctccaccccacagccttctgctgctgctcctgttaaacgtgacccagctgcagctcttctcaaacgtgagtcatcagcagctcctgtcaaacgcgaggcagcagcatctcttgtcaaaggcgagccagtagcagatgattccccaacagaagcaaaaactgaagcaaaaacagctccaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

84

Amino Acids

8.65

Weight (kDa)

9.86

Isoelectric Point (pI)

72.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	122, 128, 155, 248
AluI	AGCT	4 cut(s)	122, 128, 155, 248
Alw26I	GTCTC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	158
ApeKI	GCWGC	7 cut(s)	95, 98, 122, 125, 152, 173, 176
AspS9I	GGNCC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	7 cut(s)	82, 85, 109, 137, 164, 185, 188
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	7 cut(s)	96, 99, 123, 126, 153, 174, 177
BlsI	GCNGC	7 cut(s)	97, 100, 124, 127, 154, 175, 178
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	24, 25
BmsI	GCATC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	7 cut(s)	82, 85, 109, 137, 164, 185, 188
BseYI	CCCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	9
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	24, 25
BspMAI	CTGCAG	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	7 cut(s)	82, 85, 109, 137, 164, 185, 188
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	23
CviJI	RGCY	6 cut(s)	88, 122, 128, 155, 199, 248
CviKI_1	RGCY	6 cut(s)	88, 122, 128, 155, 199, 248
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	23
FaqI	GGGAC	1 cut(s)	9
Fnu4HI	GCNGC	7 cut(s)	96, 99, 123, 126, 153, 174, 177
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	7 cut(s)	96, 99, 123, 126, 153, 174, 177
GluI	GCNGC	7 cut(s)	96, 99, 123, 126, 153, 174, 177
GsaI	CCCAGC	1 cut(s)	122
HinfI	GANTC	2 cut(s)	143, 212
HpyAV	CCTTC	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	112, 139
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	2 cut(s)	112, 139
KflI	GGGWCCC	1 cut(s)	23
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	106, 160, 253
LpnPI	CCDG	6 cut(s)	40, 75, 117, 132, 171, 213
Lsp1109I	GCAGC	7 cut(s)	82, 85, 109, 137, 164, 185, 188
LweI	GCATC	1 cut(s)	188
MaeII	ACGT	2 cut(s)	112, 139
MaeIII	GTNAC	2 cut(s)	64, 113
MboII	GAAGA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	1 cut(s)	163
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	24, 25
NmuCI	GTSAC	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	97, 100, 124, 127, 154, 175, 178
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	24, 25
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	7 cut(s)	96, 99, 123, 126, 153, 174, 177
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	152
SetI	ASST	6 cut(s)	115, 124, 130, 142, 157, 250
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	23
TaiI	ACGT	2 cut(s)	115, 142
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	7 cut(s)	95, 98, 122, 125, 152, 173, 176
Tsp45I	GTSAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.