Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

64982199 .. 64985373

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG438900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCGTCTTCTTCCCTTCGGAAACCGAAACGAATTTCCGAGAGAGAGAAAGAGGGTTTCAGACAGGCGCACAGAAAGCTCGGAGTGAAAGGTAGGGATAGAAGCAAGGGTAGAATGGGAAACCATAAGCAAAAGTGGACGTCGGAGGAGGAAGATGCTCTAGTCGCCGGAGTTGCAAAGCACGGCGCCGGCAAATGGAAGAACATCCTCATCGATCCAGAATTCGCCCAATCTCTCATTCTCCGATCCAACATTGACCTCAAGGATAAATGGAGGAACTTGAGTCCTAGTCTTGCACTTGCACAAGTTACGCAGAAGAAAAGGAAGAATTCAAAGATAAAGAATTCAGTTCGTTACTCTACACCTGTGCTTGCACTTCCTAGTGGAACATCTCCAGATGCTGTCATGGATGATTCCAACACTGAAGAACGGTACAATGCATTGATTTTTGAGGCTCTTTTAACAATGAGAGATCCGAATGGATCTGATGTGGATGCCATTCGTAACTTTATTCAGCAAAGGGAAGAGGAGCCCATTCCACATAATTTCAAAAGGTTAGTGGGTGCGAGGTTGAGAAGTCTTGTTTCACTAGGAAAACTTGAAAAGACCAGAAATGGCTTCAAGAGCAAAGTTTTAGGAACAAAAACACCTAGGGTGTTGGCGACTTCTACTGAAACAGAAGATGATGCTGTTCATGTCGCTGCCTATACAATTGCTGATGCTGAAAACAAATCATTCTTGGCTGCTGAAGCAGTGAAGGAGGCAGAGAGAGTTTCAAAGATAGCTGAAGAAACCGAGTCTATGCTACTGCTAGTGAAAGAGATCAATGAACAATGTTCACGAGGTGAAGTTGTCCACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.21

Weight (kDa)

9.62

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	43 - 93	1.5e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	46 - 101	3e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	144 - 209	5.6e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	185
AclWI	GGATC	4 cut(s)	209, 240, 467, 490
AcsI	RAATTY	4 cut(s)	33, 221, 328, 343
AcuI	CTGAAG	3 cut(s)	444, 768, 807
AcyI	GRCGYC	2 cut(s)	140, 186
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	333, 550, 602, 622, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	79, 785
AluI	AGCT	2 cut(s)	79, 785
AlwI	GGATC	4 cut(s)	209, 240, 467, 490
AlwNI	CAGNNNCTG	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	701, 743
ApoI	RAATTY	4 cut(s)	33, 221, 328, 343
AspA2I	CCTAGG	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	70, 188
AsuHPI	GGTGA	1 cut(s)	857
AvrII	CCTAGG	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	840
BbvI	GCAGC	2 cut(s)	688, 730
BceAI	ACGGC	1 cut(s)	199
BfaI	CTAG	6 cut(s)	161, 288, 381, 590, 651, 812
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	702, 744
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	2 cut(s)	703, 745
BmiI	GGNNCC	2 cut(s)	187, 531
BmsI	GCATC	5 cut(s)	145, 388, 484, 676, 709
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	245, 301
Bsa29I	ATCGAT	1 cut(s)	213
BsaHI	GRCGYC	2 cut(s)	140, 186
BsaJI	CCNNGG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	3 cut(s)	204, 415, 499
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	161, 542
BseXI	GCAGC	2 cut(s)	688, 730
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	168, 189
BslI	CCNNNNNNNGG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	214, 245, 472, 482, 822
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	187, 531
BspPI	GGATC	4 cut(s)	209, 240, 467, 490
BspT107I	GGYRCC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	214, 245, 472, 482, 822
BssNI	GRCGYC	2 cut(s)	140, 186
BssSI	CACGAG	1 cut(s)	840
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	432
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	2 cut(s)	140, 186
BstC8I	GCNNGC	2 cut(s)	190, 372
BstDEI	CTNAG	1 cut(s)	864
BstF5I	GGATG	3 cut(s)	204, 415, 499
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	70, 188
BstKTI	GATC	5 cut(s)	217, 248, 475, 485, 825
BstMBI	GATC	5 cut(s)	214, 245, 472, 482, 822
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 164, 173, 624, 749
BstV1I	GCAGC	2 cut(s)	688, 730
BstX2I	RGATCY	2 cut(s)	472, 482
BstYI	RGATCY	2 cut(s)	472, 482
Bsu15I	ATCGAT	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	204, 415, 499
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	420, 759
Cac8I	GCNNGC	2 cut(s)	190, 372
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	2 cut(s)	70, 188
Cfr10I	RCCGGY	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	406, 695
CviJI	RGCY	7 cut(s)	79, 455, 532, 618, 743, 785, 863
CviKI_1	RGCY	7 cut(s)	79, 455, 532, 618, 743, 785, 863
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	864
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	5 cut(s)	216, 247, 474, 484, 824
DpnII	GATC	5 cut(s)	214, 245, 472, 482, 822
DraIII	CACNNNGTG	1 cut(s)	845
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	534
Eco57I	CTGAAG	3 cut(s)	444, 768, 807
EcoRI	GAATTC	3 cut(s)	221, 328, 343
EcoT14I	CCWWGG	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	2 cut(s)	409, 698
FaiI	YATR	6 cut(s)	126, 407, 543, 696, 708, 803
FatI	CATG	2 cut(s)	405, 694
Fnu4HI	GCNGC	2 cut(s)	702, 744
FokI	GGATG	3 cut(s)	191, 422, 506
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	702, 744
FspBI	CTAG	6 cut(s)	161, 288, 381, 590, 651, 812
GlaI	GCGC	2 cut(s)	69, 187
GluI	GCNGC	2 cut(s)	702, 744
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	189
HapII	CCGG	2 cut(s)	168, 189
HhaI	GCGC	2 cut(s)	70, 188
Hin1I	GRCGYC	2 cut(s)	140, 186
Hin1II	CATG	2 cut(s)	409, 698
Hin6I	GCGC	2 cut(s)	68, 186
HinP1I	GCGC	2 cut(s)	68, 186
HinfI	GANTC	3 cut(s)	283, 413, 797
HpaII	CCGG	2 cut(s)	168, 189
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	138, 839, 856
Hpy188I	TCNGA	8 cut(s)	21, 40, 62, 83, 145, 245, 477, 487
Hpy188III	TCNNGA	4 cut(s)	218, 395, 622, 840
Hpy8I	GTNNAC	3 cut(s)	138, 839, 856
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	26, 751
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	176, 296, 302, 374, 440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 164, 173, 624, 749
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	2 cut(s)	140, 186
Hsp92II	CATG	2 cut(s)	409, 698
HspAI	GCGC	2 cut(s)	68, 186
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	214, 245, 472, 482, 822
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	7 cut(s)	50, 181, 202, 231, 378, 408, 622
Lsp1109I	GCAGC	2 cut(s)	688, 730
LweI	GCATC	5 cut(s)	145, 388, 484, 676, 709
MaeI	CTAG	6 cut(s)	161, 288, 381, 590, 651, 812
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	3 cut(s)	307, 353, 503
MalI	GATC	5 cut(s)	216, 247, 474, 484, 824
MboI	GATC	5 cut(s)	214, 245, 472, 482, 822
MboII	GAAGA	9 cut(s)	3, 164, 211, 328, 337, 437, 536, 692, 800
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	2 cut(s)	472, 482
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	6 cut(s)	33, 221, 328, 343, 544, 711
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	2 cut(s)	292, 806
MmeI	TCCRAC	3 cut(s)	123, 273, 441
Mph1103I	ATGCAT	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	1 cut(s)	461
MspI	CCGG	2 cut(s)	168, 189
MunI	CAATTG	1 cut(s)	711
MwoI	GCNNNNNNNGC	5 cut(s)	76, 164, 173, 624, 749
NaeI	GCCGGC	1 cut(s)	190
NarI	GGCGCC	1 cut(s)	186
NdeII	GATC	5 cut(s)	214, 245, 472, 482, 822
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	409, 698
NlaIV	GGNNCC	2 cut(s)	187, 531
NsiI	ATGCAT	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	703, 745
PleI	GAGTC	2 cut(s)	291, 805
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	2 cut(s)	291, 805
PspN4I	GGNNCC	2 cut(s)	187, 531
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	472, 482
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	2 cut(s)	702, 744
Sau3AI	GATC	5 cut(s)	214, 245, 472, 482, 822
SchI	GAGTC	2 cut(s)	292, 806
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	5 cut(s)	145, 388, 484, 676, 709
SfoI	GGCGCC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	260, 280
SmoI	CTYRAG	2 cut(s)	260, 280
Sse9I	AATT	6 cut(s)	33, 221, 328, 343, 544, 711
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	6 cut(s)	161, 288, 381, 590, 651, 812
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	432
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	213
TasI	AATT	6 cut(s)	33, 221, 328, 343, 544, 711
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	427, 759
TseI	GCWGC	2 cut(s)	701, 743
TspDTI	ATGAA	2 cut(s)	683, 843
TspRI	CASTG	2 cut(s)	427, 759
XapI	RAATTY	4 cut(s)	33, 221, 328, 343
XmaJI	CCTAGG	1 cut(s)	650
XspI	CTAG	6 cut(s)	161, 288, 381, 590, 651, 812
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.