Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002087

Physical Location & Seq

Genomic Coordinates Reverse (-)

6498498 .. 6502360

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1083400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGAAATCCGAAGCAAAAATGGACGGTGGAGGAAGAAGAAGCTCTGAGAGCGGGGGTTAGGAAACACGGCACTGGCAAGTGGAAGGACATCCAGAAGGACCCCGAGTTCAACCCCTTTCTCTCTTCTCGCTCCAATATTGATCTCAAGGACAAATGGAGGAATATGACTGTTAGTAGCACGGGGCCTCGGGAAAAATCAAGGCCCAAAGCAAGAACAAACCCAGATGTTGCTGTTGCTTCAGTATCCGTTCCCCAGACTTCTTCTGCTGCTCCAGTCAGACGCGATTCACCGGCAGCAGCAGCAGCAACCCCAGCTAGACGTGATTCACCAGCGGCAGCCCCAGTCGGACTTGATTCACCAGCGGCAGCCCCAGTCGGACGTGATTCACTAGCAGAAGCTCCAGTCAGGCGCGATGCACCAGCGGCAACTCCATTCAAACGCGAGCCATCAACAGAAACTCCAGTCAGACGCGATACAACTCCAGTTGCGGATGATTCCTCGACTGGCTTATCTGATGCAATACCTGCTCCAGTGTGCAATGCAATGATTTTCGAAGCACTTGCTGCCACGACAGATCCAAATGGATTGGACACTAGTGCTATTGCTAGCTTTATTGAGCAAAGGAATGAGGTCCCCCAAAATTTTAGAAGGTCATTAACTGGTAGGTTGAGAAGGCTGGTTCAGCAAGACAAACTTGAAAAGATTCAACAGTGCTACAAGGTGAAAACCGATCCCTTGAGTGTGATGAAAGCACCTGCCCCGATGCAAAATGACATCCAACCAAAGCAATCGCAGAGTCCAGTATATGTGACCGTTGGTAGTGATACGTTGGAGGAATCGGCACGGGCTGCTGCACAGAGCATTGCCGAAGCAGAATACAAATCATATCTGGCAGCAGAACAAATGAAAGAGGCAGAGAGGATTTCTTTCATGGTTGAAGACACAGAATCAATGCTGCTGTTAGCAAACGAGATTTTGGAGCAATGTTCAGAAGGTGAAGTCGTGATGGTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

340

Amino Acids

36.76

Weight (kDa)

5.59

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	3.9e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 59	2e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	180 - 237	1.1e-06	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17520 AT1G17520 AT1G17520 AT1G17520 AT1G72740 AT1G72740
fragaria_vesca	FvH4_1g07940 FvH4_1g07940 FvH4_6g34130
malus_domestica	MD02G1083400.v1.1 MD09G1188600.v1.1 MD15G1211100.v1.1
prunus_persica	Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.3G045300_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1 Prupe.7G205700_v2.0.a1
pyrus_communis	pycom02g06590 pycom09g10570 pycom15g18710
rosa_chinensis	RchiOBHm_Chr2g0093821 RchiOBHm_Chr2g0144441
rosa_laevigata	RLG00000016439 RLG00000020081
rosa_multiflora	Rmu_co8254463.1_g000001 Rmu_sc0002126.1_g000001 Rmu_sc0003027.1_g000017 Rmu_sc0017523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101310 Rroxscaffold_2G00147780
rosa_rugosa	Rorug02G0040100 Rorug02G0386600
rosa_samantha	Rh2AG086500 Rh2AG438900 Rh2BG087000 Rh2BG449200 Rh2CG089400 Rh2CG425900 Rh2DG085000 Rh2DG458900
rosa_wichuraiana	Rw2G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	2 cut(s)	535, 766
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	4 cut(s)	285, 414, 444, 474
AciI	CCGC	5 cut(s)	53, 335, 365, 425, 491
AclWI	GGATC	2 cut(s)	572, 728
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	225
AgsI	TTSAA	5 cut(s)	112, 439, 701, 710, 941
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	2 cut(s)	323, 383
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	44, 317, 401, 612
AluI	AGCT	4 cut(s)	44, 317, 401, 612
AlwI	GGATC	2 cut(s)	572, 728
Ama87I	CYCGRG	2 cut(s)	104, 189
AoxI	GGCC	2 cut(s)	185, 203
ApoI	RAATTY	1 cut(s)	643
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	4 cut(s)	100, 185, 204, 634
AsuHPI	GGTGA	5 cut(s)	282, 321, 351, 736, 1010
AsuII	TTCGAA	1 cut(s)	555
AsuNHI	GCTAGC	1 cut(s)	608
AvaI	CYCGRG	2 cut(s)	104, 189
AvaII	GGWCC	2 cut(s)	100, 634
BbsI	GAAGAC	1 cut(s)	948
BccI	CCATC	2 cut(s)	457, 1003
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciVI	GTATCC	1 cut(s)	256
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	318, 392, 597, 609
BfuAI	ACCTGC	2 cut(s)	535, 766
BfuI	GTATCC	1 cut(s)	256
Bme18I	GGWCC	2 cut(s)	100, 634
BmeT110I	CYCGRG	2 cut(s)	104, 189
BmgBI	CACGTC	2 cut(s)	323, 383
BmgT120I	GGNCC	4 cut(s)	100, 185, 204, 634
BmiI	GGNNCC	3 cut(s)	102, 186, 636
BmrI	ACTGGG	2 cut(s)	338, 368
BmsI	GCATC	3 cut(s)	406, 508, 756
BmtI	GCTAGC	1 cut(s)	612
BmuI	ACTGGG	2 cut(s)	338, 368
BpiI	GAAGAC	1 cut(s)	948
BpmI	CTGGAG	5 cut(s)	258, 387, 447, 468, 516
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	131, 760
BsaJI	CCNNGG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bse118I	RCCGGY	1 cut(s)	292
Bse3DI	GCAATG	4 cut(s)	547, 552, 864, 992
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	3 cut(s)	90, 499, 777
BseMI	GCAATG	4 cut(s)	547, 552, 864, 992
BseMII	CTCAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	4 cut(s)	285, 414, 444, 474
BshFI	GGCC	2 cut(s)	187, 205
BsiHKCI	CYCGRG	2 cut(s)	104, 189
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	187, 205
BsoBI	CYCGRG	2 cut(s)	104, 189
Bsp119I	TTCGAA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	142, 577, 733
BspACI	CCGC	5 cut(s)	53, 335, 365, 425, 491
BspANI	GGCC	2 cut(s)	187, 205
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	4 cut(s)	285, 414, 444, 474
BspLI	GGNNCC	3 cut(s)	102, 186, 636
BspMI	ACCTGC	2 cut(s)	535, 766
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	572, 728
BspT104I	TTCGAA	1 cut(s)	555
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	4 cut(s)	547, 552, 864, 992
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	142, 577, 733
Bst4CI	ACNGT	4 cut(s)	28, 172, 714, 817
Bst6I	CTCTTC	1 cut(s)	130
BstAPI	GCANNNNNTGC	3 cut(s)	527, 566, 851
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	446, 610
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	90, 499, 777
BstFNI	CGCG	4 cut(s)	285, 414, 444, 474
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	145, 580, 736
BstMBI	GATC	3 cut(s)	142, 577, 733
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 302, 305, 314, 425, 527, 566, 685, 851
BstUI	CGCG	4 cut(s)	285, 414, 444, 474
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	187, 205
BtgZI	GCGATG	1 cut(s)	429
BtrI	CACGTC	2 cut(s)	323, 383
BtsCI	GGATG	3 cut(s)	90, 499, 777
BtsIMutI	CAGTG	3 cut(s)	72, 540, 719
BveI	ACCTGC	2 cut(s)	535, 766
Cac8I	GCNNGC	2 cut(s)	446, 610
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	4 cut(s)	100, 185, 204, 634
CseI	GACGC	2 cut(s)	291, 480
CviAII	CATG	1 cut(s)	934
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	144, 579, 735
DpnII	GATC	3 cut(s)	142, 577, 733
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	100, 634
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	104, 189
EcoO109I	RGGNCCY	3 cut(s)	100, 185, 634
FaeI	CATG	1 cut(s)	937
FaiI	YATR	5 cut(s)	167, 808, 810, 889, 935
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	1 cut(s)	933
FauI	CCCGC	1 cut(s)	46
FokI	GGATG	3 cut(s)	77, 506, 764
FspBI	CTAG	4 cut(s)	318, 392, 597, 609
GlaI	GCGC	1 cut(s)	413
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	5 cut(s)	258, 387, 447, 468, 516
HaeIII	GGCC	2 cut(s)	187, 205
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	2 cut(s)	291, 480
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	937
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	9 cut(s)	287, 326, 356, 386, 497, 706, 799, 839, 950
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	5 cut(s)	282, 321, 351, 736, 1010
Hpy188I	TCNGA	8 cut(s)	12, 48, 281, 350, 380, 470, 517, 994
Hpy188III	TCNNGA	3 cut(s)	94, 191, 1006
HpyAV	CCTTC	5 cut(s)	79, 91, 645, 669, 989
HpyCH4III	ACNGT	4 cut(s)	28, 172, 714, 817
HpyCH4IV	ACGT	3 cut(s)	322, 382, 830
HpyCH4V	TGCA	6 cut(s)	419, 521, 540, 545, 769, 857
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 302, 305, 314, 425, 527, 566, 685, 851
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	3 cut(s)	322, 382, 830
Hsp92II	CATG	1 cut(s)	937
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	142, 577, 733
LmnI	GCTCC	5 cut(s)	137, 277, 406, 535, 982
LweI	GCATC	3 cut(s)	406, 508, 756
MaeI	CTAG	4 cut(s)	318, 392, 597, 609
MaeII	ACGT	3 cut(s)	322, 382, 830
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	144, 579, 735
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	3 cut(s)	142, 577, 733
MboII	GAAGA	5 cut(s)	47, 50, 117, 255, 953
MflI	RGATCY	1 cut(s)	577
MluCI	AATT	1 cut(s)	643
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	4 cut(s)	328, 358, 805, 813
MnlI	CCTC	8 cut(s)	25, 153, 198, 511, 625, 829, 907, 915
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	1 cut(s)	659
MspA1I	CMGCKG	3 cut(s)	335, 365, 425
MspI	CCGG	1 cut(s)	293
MvnI	CGCG	4 cut(s)	285, 414, 444, 474
MwoI	GCNNNNNNNGC	9 cut(s)	50, 302, 305, 314, 425, 527, 566, 685, 851
NdeII	GATC	3 cut(s)	142, 577, 733
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	1 cut(s)	937
NlaIV	GGNNCC	3 cut(s)	102, 186, 636
NmuCI	GTSAC	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	555
PaqCI	CACCTGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	8 cut(s)	287, 326, 356, 386, 497, 706, 839, 950
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
PpuMI	RGGWCCY	2 cut(s)	100, 634
Psp5II	RGGWCCY	2 cut(s)	100, 634
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	102, 186, 636
PspPI	GGNCC	4 cut(s)	100, 185, 204, 634
PspPPI	RGGWCCY	2 cut(s)	100, 634
PsuI	RGATCY	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	659
Sau3AI	GATC	3 cut(s)	142, 577, 733
Sau96I	GGNCC	4 cut(s)	100, 185, 204, 634
SchI	GAGTC	1 cut(s)	808
SfaNI	GCATC	3 cut(s)	406, 508, 756
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	2 cut(s)	100, 634
SmlI	CTYRAG	2 cut(s)	146, 739
SmoI	CTYRAG	2 cut(s)	146, 739
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	1 cut(s)	643
SsiI	CCGC	5 cut(s)	53, 335, 365, 425, 491
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	4 cut(s)	318, 392, 597, 609
TaaI	ACNGT	4 cut(s)	28, 172, 714, 817
TaiI	ACGT	3 cut(s)	325, 385, 833
TaqI	TCGA	2 cut(s)	503, 555
TasI	AATT	1 cut(s)	643
TauI	GCSGC	3 cut(s)	338, 368, 428
TfiI	GAWTC	8 cut(s)	287, 326, 356, 386, 497, 706, 839, 950
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	3 cut(s)	79, 540, 719
TseFI	GTSAC	1 cut(s)	811
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	3 cut(s)	764, 922, 923
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	79, 540, 719
VpaK11BI	GGWCC	2 cut(s)	100, 634
XapI	RAATTY	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	4 cut(s)	318, 392, 597, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.