Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

6090405 .. 6092027

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTAAGAATAACAACATCGTGATCGTCTTCGATTTTGACAAGACAATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGAATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATCAAACAAGTCCTTAGGAGAATCCCAATTCATCCACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGGGTGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAATCATTGAACATCTCGGGATTGGTGAGTTTTTCTCCGAGATTAACACAAATCCAGGACTTGTAGATGAACAAGGAAGATTAATAGTCTCTCCTTACCATGACTTCACCAAATCTTCTCATGGTTGCTCTCGTTGCCCTCCTAACATGTGCAAGGGTTTAATAATCGATAGGATTCAAGCTTCTCTAACGAAAGAAGGGAAGACGAGCAAGATGATCTATCTTGGAGATGGTGCTGGTGATTACTGTCCCAGTCTTGGACTCAAAGCTGAAGATTACATGATGCCAAGGAAGAATTTCCCGGTTTGGGATTTGATTAGTCAAAATCCCATGTTGGTTAAGGCTACCGTTAGAGATTGGACCGATGGAGAAGATATGGAGAGGATACTAATGGAAATAATCAACGAAATTATGTCATCAGAGGAAGGAGAGGAGAATGACAAGATGTTGAGCTCTGAAAACTGCAAGATATCTGTTGGGATTGTTCATGAACCTATTCAAGTTCCTTTAAATTTGGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

279

Amino Acids

31.57

Weight (kDa)

5.01

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	7 - 239	2.6e-98	Putative Phosphatase
HAD	PF12710	9 - 186	3.8e-08	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	610, 826
AcuI	CTGAAG	1 cut(s)	606
AcvI	CACGTG	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	572, 622
AflIII	ACRYGT	3 cut(s)	232, 300, 462
AgsI	TTSAA	5 cut(s)	109, 191, 326, 494, 815
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	6 cut(s)	115, 166, 277, 497, 584, 768
AluI	AGCT	6 cut(s)	115, 166, 277, 497, 584, 768
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	610, 826
AseI	ATTAAT	1 cut(s)	398
Asp700I	GAANNNNTTC	2 cut(s)	611, 810
AspS9I	GGNCC	1 cut(s)	675
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	3 cut(s)	353, 415, 566
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	675
AxyI	CCTNAGG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	770
BbrPI	CACGTG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	22, 524
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	3 cut(s)	254, 539, 674
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	693
Bme1390I	CCNGG	2 cut(s)	372, 617
Bme18I	GGWCC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	675
BmrFI	CCNGG	2 cut(s)	372, 617
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	22, 524
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpuMI	CCSGG	1 cut(s)	617
Bsa29I	ATCGAT	2 cut(s)	54, 483
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	131, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 622
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	372
BseCI	ATCGAT	2 cut(s)	54, 483
BseDI	CCNNGG	2 cut(s)	131, 602
BseGI	GGATG	4 cut(s)	88, 159, 226, 237
BseLI	CCNNNNNNNGG	2 cut(s)	572, 622
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	761
BseYI	CCCAGC	1 cut(s)	241
BshVI	ATCGAT	2 cut(s)	54, 483
BsiHKAI	GWGCWC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	572, 622
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	549
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp143I	GATC	3 cut(s)	24, 172, 531
BspCNI	CTCAG	1 cut(s)	270
BspDI	ATCGAT	2 cut(s)	54, 483
BspHI	TCATGA	3 cut(s)	144, 169, 802
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	131, 602
BssMI	GATC	3 cut(s)	24, 172, 531
BssT1I	CCWWGG	2 cut(s)	131, 602
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	563, 664
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	3 cut(s)	6, 209, 278
BstF5I	GGATG	4 cut(s)	88, 159, 226, 237
BstKTI	GATC	3 cut(s)	27, 175, 534
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	24, 172, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	370, 615
BstV2I	GAAGAC	2 cut(s)	22, 524
Bsu15I	ATCGAT	2 cut(s)	54, 483
Bsu36I	CCTNAGG	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	693
BsuTUI	ATCGAT	2 cut(s)	54, 483
BtsCI	GGATG	4 cut(s)	88, 159, 226, 237
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	275
CciI	TCATGA	3 cut(s)	144, 169, 802
Cfr13I	GGNCC	1 cut(s)	675
ClaI	ATCGAT	2 cut(s)	54, 483
CseI	GACGC	1 cut(s)	302
CviJI	RGCY	9 cut(s)	5, 115, 166, 245, 277, 497, 584, 659, 768
CviKI_1	RGCY	9 cut(s)	5, 115, 166, 245, 277, 497, 584, 659, 768
DdeI	CTNAG	3 cut(s)	6, 209, 278
DpnI	GATC	3 cut(s)	26, 174, 533
DpnII	GATC	3 cut(s)	24, 172, 531
DraI	TTTAAA	1 cut(s)	825
Ecl136II	GAGCTC	1 cut(s)	768
Eco130I	CCWWGG	2 cut(s)	131, 602
Eco24I	GRGCYC	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	606
Eco72I	CACGTG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	786
EcoT14I	CCWWGG	2 cut(s)	131, 602
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	2 cut(s)	131, 602
FaqI	GGGAC	1 cut(s)	549
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	4 cut(s)	95, 166, 213, 224
FriOI	GRGCYC	1 cut(s)	770
GsaI	CCCAGC	1 cut(s)	245
HapII	CCGG	1 cut(s)	617
HgaI	GACGC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	4 cut(s)	148, 216, 490, 576
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	3 cut(s)	353, 415, 566
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	153, 355, 736, 772
Hpy188III	TCNNGA	5 cut(s)	22, 145, 170, 334, 803
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	3 cut(s)	154, 506, 734
HpyCH4III	ACNGT	2 cut(s)	563, 664
HpyCH4IV	ACGT	2 cut(s)	232, 302
HpyCH4V	TGCA	2 cut(s)	468, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	3 cut(s)	6, 209, 278
HpySE526I	ACGT	2 cut(s)	232, 302
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	24, 172, 531
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	125, 255, 357, 384, 537, 580, 630
LweI	GCATC	1 cut(s)	588
MaeII	ACGT	2 cut(s)	232, 302
MalI	GATC	3 cut(s)	26, 174, 533
MboI	GATC	3 cut(s)	24, 172, 531
MboII	GAAGA	8 cut(s)	22, 203, 405, 423, 529, 599, 619, 698
MhlI	GDGCHC	1 cut(s)	770
MluCI	AATT	5 cut(s)	70, 222, 610, 723, 826
MlyI	GAGTC	1 cut(s)	570
MnlI	CCTC	4 cut(s)	465, 690, 730, 739
MroXI	GAANNNNTTC	2 cut(s)	611, 810
MseI	TTAA	5 cut(s)	360, 398, 476, 654, 824
MslI	CAYNNNNRTG	2 cut(s)	174, 231
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	2 cut(s)	372, 617
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	617
NdeII	GATC	3 cut(s)	24, 172, 531
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	3 cut(s)	144, 169, 802
PciI	ACATGT	1 cut(s)	462
PdmI	GAANNNNTTC	2 cut(s)	611, 810
PfeI	GAWTC	3 cut(s)	148, 216, 490
PfoI	TCCNGGA	1 cut(s)	370
PleI	GAGTC	1 cut(s)	570
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	570
Ppu21I	YACGTR	1 cut(s)	233
PscI	ACATGT	1 cut(s)	462
PshBI	ATTAAT	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	675
RseI	CAYNNNNRTG	2 cut(s)	174, 231
SacI	GAGCTC	1 cut(s)	770
SaqAI	TTAA	5 cut(s)	360, 398, 476, 654, 824
Sau3AI	GATC	3 cut(s)	24, 172, 531
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	372, 617
SduI	GDGCHC	1 cut(s)	770
SetI	ASST	9 cut(s)	117, 168, 235, 279, 305, 499, 586, 770, 811
SfaNI	GCATC	1 cut(s)	588
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	174, 231
Sse9I	AATT	5 cut(s)	70, 222, 610, 723, 826
SstI	GAGCTC	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	370, 615
StyI	CCWWGG	2 cut(s)	131, 602
TaaI	ACNGT	2 cut(s)	563, 664
TaiI	ACGT	2 cut(s)	235, 305
TaqI	TCGA	4 cut(s)	33, 54, 312, 483
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	5 cut(s)	70, 222, 610, 723, 826
TfiI	GAWTC	3 cut(s)	148, 216, 490
Tru1I	TTAA	5 cut(s)	360, 398, 476, 654, 824
Tru9I	TTAA	5 cut(s)	360, 398, 476, 654, 824
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	9 cut(s)	99, 158, 161, 173, 215, 298, 399, 791, 819
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	675
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	2 cut(s)	610, 826
XceI	RCATGY	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	2 cut(s)	611, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.