Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

9458963 .. 9460873

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTTAGTGGTAAGTGCGTTTCTAAGTTGGCCAGCCTCCAGGGTGAAATTAATTCCCTTCGAATATTCCCCTCATTCCCCACACACTTGCATTGCTATAAATACCCTTCTCTTCTTTGTGTCTTTCTCAGGAGAAATTATAACAACCAAGAAATACTCCTTGTTCTTTTTCTTCTGCTTCTTTGTGTGTTTTTTTTCTTGGTGCAAAAATTTTCACGAACAATGGCAGGAATTGTGGTGGTTTTTGACTTTGACAAGACAATCATTGAGTGTGACAGTGACAATTGGGTGGTGGATGAATTGGGTGCCACTGATCTGTTCAACGAACTCCTCCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACCATTGAAGACATTGTGGAGGTTCTGAAAAGGACTCCAATCCACCCAAGAGTTGTGCCAGCCATTAAAGCAGCTCACGCTTTAGGGTGTGATTTGAGGATTTTGAGTGATGCAAATCTGTTTTTTATTGAGACAATTTTGAAGCATCTTGGGCTAGAGGAATATTTCTCAGAGATAAACACGAACCCAAGTTATGTTGATGAAGAAGGAAGGCTTAGGATTTCACCTTACTGCGATTTCACCCAATCTCCTCATGGCTGCAGCCGCTGCCCTCCCAACATGTGCAAGAGTGTGATCATTGAAAGAATCCAGGCTTCTGTCTCAACTGATGGGAAGAAAAGGTTAATCTATCTTGGTGATGGAAGTGGAGATTATTGCCCAAGCTTGAAGCTCAAAGAAGGAGACTTTGTGATGCCAAGGAAGAACTTCCCACTTTATGACCTAATCTGCAAAAACCCATTACTCATCAGGGCTGAGATCCATGAGTGGACTGATGGAGAGGAGCTTGAGCAGATTCTGCTAAACCTAATCAACTCAATTTCCATTGAAGAACATGCTCAGTTTCTTTCAGCTGATTGCAAGTTGCAGACTATTTCTGTTGAGGCCCTTCCTCAAGCTCTCCCTGTCCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

344

Amino Acids

39.03

Weight (kDa)

5.43

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	345
AciI	CCGC	1 cut(s)	661
AclWI	GGATC	1 cut(s)	868
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	6 cut(s)	322, 404, 538, 698, 784, 944
AjnI	CCWGG	2 cut(s)	39, 705
AluBI	AGCT	7 cut(s)	379, 470, 780, 787, 901, 968, 1013
AluI	AGCT	7 cut(s)	379, 470, 780, 787, 901, 968, 1013
Alw26I	GTCTC	3 cut(s)	521, 721, 792
AlwI	GGATC	1 cut(s)	868
AlwNI	CAGNNNCTG	2 cut(s)	663, 913
AoxI	GGCC	2 cut(s)	30, 999
ApeKI	GCWGC	4 cut(s)	467, 654, 657, 663
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	1000
AsuHPI	GGTGA	4 cut(s)	56, 612, 628, 764
AsuII	TTCGAA	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	4 cut(s)	479, 641, 650, 669
BccI	CCATC	3 cut(s)	719, 749, 884
BciT130I	CCWGG	2 cut(s)	41, 707
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	3 cut(s)	521, 721, 792
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	655
BisI	GCNGC	5 cut(s)	468, 655, 658, 661, 664
BlsI	GCNGC	5 cut(s)	469, 656, 659, 662, 665
Bme1390I	CCNGG	2 cut(s)	41, 707
BmgT120I	GGNCC	1 cut(s)	1000
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	41, 707
BmsI	GCATC	3 cut(s)	496, 550, 798
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	923, 993
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	40, 344, 812
BsaXI	ACNNNNNCTCC	4 cut(s)	628, 658, 789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	41, 707
BseDI	CCNNGG	3 cut(s)	40, 344, 812
BseGI	GGATG	2 cut(s)	301, 372
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	4 cut(s)	142, 579, 861, 968
BseRI	GAGGAG	3 cut(s)	320, 636, 911
BseXI	GCAGC	4 cut(s)	479, 641, 650, 669
BshFI	GGCC	2 cut(s)	32, 1001
BshNI	GGYRCC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	3 cut(s)	521, 721, 792
BsnI	GGCC	2 cut(s)	32, 1001
Bsp119I	TTCGAA	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	313, 690, 873
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	2 cut(s)	32, 1001
BspCNI	CTCAG	4 cut(s)	141, 578, 862, 967
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	659
BspPI	GGATC	1 cut(s)	868
BspT104I	TTCGAA	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	40, 344, 812
BssMI	GATC	3 cut(s)	313, 690, 873
BssT1I	CCWWGG	2 cut(s)	344, 812
Bst2UI	CCWGG	2 cut(s)	41, 707
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	2 cut(s)	663, 913
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	34, 456
BstDEI	CTNAG	6 cut(s)	24, 128, 565, 611, 870, 954
BstF5I	GGATG	2 cut(s)	301, 372
BstKTI	GATC	3 cut(s)	316, 693, 876
BstMAI	GTCTC	3 cut(s)	521, 721, 792
BstMBI	GATC	3 cut(s)	313, 690, 873
BstMWI	GCNNNNNNNGC	6 cut(s)	464, 473, 547, 660, 663, 913
BstNI	CCWGG	2 cut(s)	41, 707
BstNSI	RCATGY	2 cut(s)	679, 953
BstSCI	CCNGG	2 cut(s)	39, 705
BstSFI	CTRYAG	1 cut(s)	655
BstV1I	GCAGC	4 cut(s)	479, 641, 650, 669
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	32, 1001
BtsCI	GGATG	2 cut(s)	301, 372
BtsIMutI	CAGTG	2 cut(s)	283, 309
Cac8I	GCNNGC	2 cut(s)	34, 456
CaiI	CAGNNNCTG	2 cut(s)	663, 913
Cfr13I	GGNCC	1 cut(s)	1000
CviAII	CATG	6 cut(s)	340, 358, 650, 676, 878, 950
DdeI	CTNAG	6 cut(s)	24, 128, 565, 611, 870, 954
DpnI	GATC	3 cut(s)	315, 692, 875
DpnII	GATC	3 cut(s)	313, 690, 873
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	344, 812
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRII	CCWGG	2 cut(s)	39, 705
EcoT14I	CCWWGG	2 cut(s)	344, 812
ErhI	CCWWGG	2 cut(s)	344, 812
FaeI	CATG	6 cut(s)	343, 361, 653, 679, 881, 953
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	6 cut(s)	339, 357, 649, 675, 877, 949
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	468, 655, 658, 661, 664
FokI	GGATG	2 cut(s)	308, 379
Fsp4HI	GCNGC	5 cut(s)	468, 655, 658, 661, 664
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	5 cut(s)	468, 655, 658, 661, 664
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	32, 1001
Hin1II	CATG	6 cut(s)	343, 361, 653, 679, 881, 953
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	3 cut(s)	430, 702, 910
HphI	GGTGA	4 cut(s)	56, 612, 628, 764
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	2 cut(s)	423, 568
Hpy188III	TCNNGA	2 cut(s)	130, 216
Hpy8I	GTNNAC	1 cut(s)	885
HpyAV	CCTTC	7 cut(s)	68, 117, 367, 596, 600, 788, 1013
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	8 cut(s)	91, 205, 509, 657, 681, 846, 975, 982
HpyF10VI	GCNNNNNNNGC	6 cut(s)	464, 473, 547, 660, 663, 913
HpyF3I	CTNAG	6 cut(s)	24, 128, 565, 611, 870, 954
Hsp92II	CATG	6 cut(s)	343, 361, 653, 679, 881, 953
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	3 cut(s)	313, 690, 873
LmnI	GCTCC	2 cut(s)	376, 898
LpnPI	CCDG	9 cut(s)	26, 46, 53, 115, 213, 468, 692, 719, 850
Lsp1109I	GCAGC	4 cut(s)	479, 641, 650, 669
LweI	GCATC	3 cut(s)	496, 550, 798
MaeI	CTAG	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	272, 278
MalI	GATC	3 cut(s)	315, 692, 875
MboI	GATC	3 cut(s)	313, 690, 873
MboII	GAAGA	7 cut(s)	104, 164, 416, 611, 742, 829, 956
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	1 cut(s)	873
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	9 cut(s)	48, 52, 136, 209, 231, 283, 299, 531, 933
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	424
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	51, 462, 740
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	663, 968
MspR9I	CCNGG	2 cut(s)	41, 707
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	41, 707
MwoI	GCNNNNNNNGC	6 cut(s)	464, 473, 547, 660, 663, 913
NdeII	GATC	3 cut(s)	313, 690, 873
NlaIII	CATG	6 cut(s)	343, 361, 653, 679, 881, 953
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	2 cut(s)	272, 278
NspI	RCATGY	2 cut(s)	679, 953
NspV	TTCGAA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	702, 910
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	5 cut(s)	469, 656, 659, 662, 665
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PscI	ACATGT	1 cut(s)	675
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	39, 705
PspGI	CCWGG	2 cut(s)	39, 705
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	1000
PstI	CTGCAG	1 cut(s)	659
PstNI	CAGNNNCTG	2 cut(s)	663, 913
PsuI	RGATCY	1 cut(s)	873
PvuII	CAGCTG	1 cut(s)	968
SaqAI	TTAA	3 cut(s)	51, 462, 740
SatI	GCNGC	5 cut(s)	468, 655, 658, 661, 664
Sau3AI	GATC	3 cut(s)	313, 690, 873
Sau96I	GGNCC	1 cut(s)	1000
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	41, 707
SfaNI	GCATC	3 cut(s)	496, 550, 798
SfcI	CTRYAG	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	902, 1008
SmoI	CTYRAG	2 cut(s)	902, 1008
Sse9I	AATT	9 cut(s)	48, 52, 136, 209, 231, 283, 299, 531, 933
SsiI	CCGC	1 cut(s)	661
SspI	AATATT	2 cut(s)	66, 560
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	39, 705
StyI	CCWWGG	2 cut(s)	344, 812
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	61
TasI	AATT	9 cut(s)	48, 52, 136, 209, 231, 283, 299, 531, 933
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	2 cut(s)	702, 910
Tru1I	TTAA	3 cut(s)	51, 462, 740
Tru9I	TTAA	3 cut(s)	51, 462, 740
TscAI	CASTG	2 cut(s)	283, 316
TseFI	GTSAC	2 cut(s)	272, 278
TseI	GCWGC	4 cut(s)	467, 654, 657, 663
Tsp45I	GTSAC	2 cut(s)	272, 278
TspDTI	ATGAA	4 cut(s)	312, 371, 386, 612
TspRI	CASTG	2 cut(s)	283, 316
Van91I	CCANNNNNTGG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	2 cut(s)	679, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.