Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

17688034 .. 17690008

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1195300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAGGAATTGTGGTGGTTTTTGACTTTGACAAGACAATCATTGAGTGTGACAGTGACAATTGGGTGGTGGATGAATTGGGTGCCACTGATCTGTTCAATGAACTCCTCCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACCATTGAAGACATTATGGAGGTTCTGAAAAGGACTCCAATTCACCCAAGAGTTGTGCCAGCCATTAAAGCAGCTCACGCTTTAGGGTGTGATTTGAGGATTTTGAGTGATGCAAATCTGTTTTTTATTGAGACAATTTTGAAGCATCTTGGGCTAGAGGAATATTTCTCAGAGATAAACACTAACCCAAGTTATGTTGATGAAGAAGGAAGGCTTAGGATTTCACCTTACTGCGATTTCACCCAATCTCCTCATGGCTGCAGCCGCTGCCCTCCCAACATGTGCAAGAGTGTGATCATTGAAAGAATCCAGGCTTCTGTCTCAACTGATGGGAAGAAAAGGTTAATCTATCTTGGTGATGGAAGTGGAGATTATTGCCCAAGCTTGAAGCTCAAAGAAGGAGACTTTGTGATGCCAAGGAAGAACTTCCCACTTTATGACCTAATCTGCAAAAACCCGTTACTCATCAAAGCTGAGATCCATGAGTGGACTGATGGAGAGGAGCTTGAGCAGATTCTGCTAAACCTAATCAACTCAATTTCCATTGACGAACATGCTCAGTTTCTTTCAGCTGATTGCAAGTTGCAGACTATTTCTGTTGAGGCCCTTCCTCAAGCTCTCCCTGTCCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

4.81

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 235	4.9e-97	Putative Phosphatase
HAD	PF12710	6 - 129	5.6e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	1 cut(s)	646
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	100, 182, 316, 476, 562
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	8 cut(s)	157, 248, 558, 565, 647, 679, 746, 791
AluI	AGCT	8 cut(s)	157, 248, 558, 565, 647, 679, 746, 791
Alw26I	GTCTC	3 cut(s)	299, 499, 570
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	2 cut(s)	441, 691
AoxI	GGCC	1 cut(s)	777
ApeKI	GCWGC	4 cut(s)	245, 432, 435, 441
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	4 cut(s)	209, 390, 406, 542
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	257, 419, 428, 447
BccI	CCATC	3 cut(s)	497, 527, 662
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	299, 499, 570
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	5 cut(s)	246, 433, 436, 439, 442
BlsI	GCNGC	5 cut(s)	247, 434, 437, 440, 443
Bme1390I	CCNGG	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	3 cut(s)	274, 328, 576
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	701, 771
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	122, 590
BsaXI	ACNNNNNCTCC	4 cut(s)	406, 436, 567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	122, 590
BseGI	GGATG	2 cut(s)	79, 150
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	3 cut(s)	357, 639, 746
BseRI	GAGGAG	3 cut(s)	98, 414, 689
BseXI	GCAGC	4 cut(s)	257, 419, 428, 447
BshFI	GGCC	1 cut(s)	779
BshNI	GGYRCC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	3 cut(s)	299, 499, 570
BsnI	GGCC	1 cut(s)	779
Bsp143I	GATC	3 cut(s)	91, 468, 651
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	3 cut(s)	356, 640, 745
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	122, 590
BssMI	GATC	3 cut(s)	91, 468, 651
BssT1I	CCWWGG	2 cut(s)	122, 590
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	441, 691
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	343, 389, 648, 732
BstF5I	GGATG	2 cut(s)	79, 150
BstKTI	GATC	3 cut(s)	94, 471, 654
BstMAI	GTCTC	3 cut(s)	299, 499, 570
BstMBI	GATC	3 cut(s)	91, 468, 651
BstMWI	GCNNNNNNNGC	6 cut(s)	242, 251, 325, 438, 441, 691
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	2 cut(s)	457, 731
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	4 cut(s)	257, 419, 428, 447
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	79, 150
BtsIMutI	CAGTG	2 cut(s)	61, 87
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	2 cut(s)	441, 691
Cfr13I	GGNCC	1 cut(s)	778
CviAII	CATG	6 cut(s)	118, 136, 428, 454, 656, 728
DdeI	CTNAG	4 cut(s)	343, 389, 648, 732
DpnI	GATC	3 cut(s)	93, 470, 653
DpnII	GATC	3 cut(s)	91, 468, 651
Eco130I	CCWWGG	2 cut(s)	122, 590
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	122, 590
ErhI	CCWWGG	2 cut(s)	122, 590
FaeI	CATG	6 cut(s)	121, 139, 431, 457, 659, 731
FaiI	YATR	9 cut(s)	119, 137, 191, 369, 429, 455, 612, 657, 729
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	6 cut(s)	117, 135, 427, 453, 655, 727
FbaI	TGATCA	1 cut(s)	468
Fnu4HI	GCNGC	5 cut(s)	246, 433, 436, 439, 442
FokI	GGATG	2 cut(s)	86, 157
Fsp4HI	GCNGC	5 cut(s)	246, 433, 436, 439, 442
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	5 cut(s)	246, 433, 436, 439, 442
HaeIII	GGCC	1 cut(s)	779
Hin1II	CATG	6 cut(s)	121, 139, 431, 457, 659, 731
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	3 cut(s)	208, 480, 688
HphI	GGTGA	4 cut(s)	209, 390, 406, 542
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	201, 346
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	5 cut(s)	145, 374, 378, 566, 791
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	287, 435, 459, 624, 753, 760
HpyF10VI	GCNNNNNNNGC	6 cut(s)	242, 251, 325, 438, 441, 691
HpyF3I	CTNAG	4 cut(s)	343, 389, 648, 732
Hsp92II	CATG	6 cut(s)	121, 139, 431, 457, 659, 731
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	91, 468, 651
LmnI	GCTCC	2 cut(s)	154, 676
LpnPI	CCDG	3 cut(s)	246, 470, 497
Lsp1109I	GCAGC	4 cut(s)	257, 419, 428, 447
LweI	GCATC	3 cut(s)	274, 328, 576
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	50, 56, 633
MalI	GATC	3 cut(s)	93, 470, 653
MboI	GATC	3 cut(s)	91, 468, 651
MboII	GAAGA	4 cut(s)	194, 389, 520, 607
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	1 cut(s)	651
MluCI	AATT	6 cut(s)	9, 61, 77, 213, 309, 711
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	119, 187, 264, 325, 435, 456, 667, 769, 795
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	2 cut(s)	240, 518
MspA1I	CMGCKG	2 cut(s)	441, 746
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	6 cut(s)	242, 251, 325, 438, 441, 691
NdeII	GATC	3 cut(s)	91, 468, 651
NlaIII	CATG	6 cut(s)	121, 139, 431, 457, 659, 731
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	50, 56
NspI	RCATGY	2 cut(s)	457, 731
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	480, 688
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	5 cut(s)	247, 434, 437, 440, 443
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	441, 691
PsuI	RGATCY	1 cut(s)	651
PvuII	CAGCTG	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	240, 518
SatI	GCNGC	5 cut(s)	246, 433, 436, 439, 442
Sau3AI	GATC	3 cut(s)	91, 468, 651
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	274, 328, 576
SfcI	CTRYAG	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	680, 786
SmoI	CTYRAG	2 cut(s)	680, 786
Sse9I	AATT	6 cut(s)	9, 61, 77, 213, 309, 711
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	122, 590
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	6 cut(s)	9, 61, 77, 213, 309, 711
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	480, 688
Tru1I	TTAA	2 cut(s)	240, 518
Tru9I	TTAA	2 cut(s)	240, 518
TscAI	CASTG	2 cut(s)	61, 94
TseFI	GTSAC	2 cut(s)	50, 56
TseI	GCWGC	4 cut(s)	245, 432, 435, 441
Tsp45I	GTSAC	2 cut(s)	50, 56
TspDTI	ATGAA	5 cut(s)	90, 117, 149, 164, 390
TspRI	CASTG	2 cut(s)	61, 94
Van91I	CCANNNNNTGG	1 cut(s)	123
XceI	RCATGY	2 cut(s)	457, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.