Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000399.1

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

83244 .. 83867

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000399.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggaactcatggataggatgatgaaggagcttcactcacaaggaaaaacatatgaggacattgtggaggtcctcaaaacaacttcaattcatcacaaaattgtggcagccattaaagcagctcatgctttaggatgtgatttgaggattgtgagtgatgcgaatgtgtttttcattgagacgattttgaagcatcttggcttggaggaatatttcttagaaatcaacactaacccaggttatgttgatgaagaaggaagggttaggatttcccctttatgtcatttcaccagttcccctcatgggtgtagcctatgccctcctaacatgtgcaagagtgtgataattgagagaatccaagcttcaattgaaggaaggaaaaggatgatctacttgggtgatggagttggtaattattgccctagcttgaagctaaggaaaggagattttgtgattccaaggaagaatttcccgcttttcgataagattttccagaaccctctggctcttaggcctcgtttggttcgcggaaaggaaatcatttccttaggaaatccgatgggaaaggaaaacgaacttctcactaactttcctttccgctgtttggaaacgttgggaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

8.65

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	528
AciI	CCGC	3 cut(s)	473, 528, 598
AclI	AACGTT	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	303, 604
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	87, 190, 366, 371, 430
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	5 cut(s)	31, 122, 362, 426, 433
AluI	AGCT	5 cut(s)	31, 122, 362, 426, 433
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	107, 119
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	280, 410
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	119, 131
BccI	CCATC	2 cut(s)	395, 553
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	423
BisI	GCNGC	2 cut(s)	108, 120
BlsI	GCNGC	2 cut(s)	109, 121
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	148, 202
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	235, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 604
Bse1I	ACTGG	1 cut(s)	291
Bse21I	CCTNAGG	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	235, 458
BseGI	GGATG	3 cut(s)	24, 140, 390
BseLI	CCNNNNNNNGG	2 cut(s)	303, 604
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	119, 131
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	303, 604
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	473, 528, 598
BspANI	GGCC	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	235, 458
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstDEI	CTNAG	4 cut(s)	217, 434, 509, 547
BstF5I	GGATG	3 cut(s)	24, 140, 390
BstFNI	CGCG	1 cut(s)	528
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	119, 131
Bsu36I	CCTNAGG	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	24, 140, 390
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	4 cut(s)	10, 125, 302, 328
DdeI	CTNAG	4 cut(s)	217, 434, 509, 547
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	70
Eco81I	CCTNAGG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	13, 128, 305, 331
FaiI	YATR	9 cut(s)	11, 52, 54, 126, 243, 280, 303, 316, 329
FatI	CATG	4 cut(s)	9, 124, 301, 327
FauI	CCCGC	1 cut(s)	480
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	108, 120
FokI	GGATG	3 cut(s)	31, 147, 397
Fsp4HI	GCNGC	2 cut(s)	108, 120
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	108, 120
HaeIII	GGCC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	13, 128, 305, 331
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	354, 454
HphI	GGTGA	2 cut(s)	280, 410
Hpy188I	TCNGA	1 cut(s)	558
Hpy188III	TCNNGA	1 cut(s)	493
HpyAV	CCTTC	5 cut(s)	19, 248, 252, 365, 369
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
HpyF3I	CTNAG	4 cut(s)	217, 434, 509, 547
HpySE526I	ACGT	1 cut(s)	611
Hsp92II	CATG	4 cut(s)	13, 128, 305, 331
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	222, 249, 304, 488, 506
Lsp1109I	GCAGC	2 cut(s)	119, 131
LweI	GCATC	2 cut(s)	148, 202
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	611
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	2 cut(s)	263, 475
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	6 cut(s)	87, 99, 345, 366, 412, 466
MnlI	CCTC	9 cut(s)	49, 61, 83, 138, 199, 309, 330, 510, 525
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	4 cut(s)	13, 128, 305, 331
NspI	RCATGY	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	514
PciI	ACATGT	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	354, 454
PkrI	GCNGC	2 cut(s)	109, 121
PpuMI	RGGWCCY	1 cut(s)	70
PscI	ACATGT	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	108, 120
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	8 cut(s)	33, 72, 124, 241, 364, 428, 435, 614
SfaNI	GCATC	2 cut(s)	148, 202
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	6 cut(s)	87, 99, 345, 366, 412, 466
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	3 cut(s)	473, 528, 598
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	458
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	480
TasI	AATT	6 cut(s)	87, 99, 345, 366, 412, 466
TfiI	GAWTC	2 cut(s)	354, 454
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	2 cut(s)	107, 119
TspDTI	ATGAA	4 cut(s)	38, 80, 163, 264
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.