Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

19811848 .. 19813724

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAGGAATTGTGGTGGTTTTCGACTTTGACAAGACAATCATTGAGTGTGATAGTGACAATTGGGTGGTGGATGAATTAGGTGCCACTGACTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACTCACTCATGGATACGATGATGAAGGAGCTTCGTTCGCAAGGAAAAACCATTGAAGACACTGCGGAGGTTCTGAAAAGGATCCCAATTCATCCAAGAGTTGTGCCAGCCATTAAAGCAGCTCATGCTTTAGGGTGTGATTTGAGGATTTTGAGTGATGCAAATCTGTTTTTTATTGAGACAATTTTGAAGCATCTTGGATTAGAGGAATATTTCTCAGAGATCAACACCAACCCAAGTTATGTTGATGAAGAAGGAAGTCTTAGGATTTCACCTTACTGTGATTTCACCAATTCCCCTCATGGCTGCAGCCTCTGCCCTCCCAACATGTGCAAGAGTGTGATCCTTGAAAGAATCCAGACTTCTGTATCAACTGAGGGGAAGAAAAGGTTAATCTATCTTGGTGATGGAAGTGGAGATTACTGCCCAAGTTTGAAGCTCAAAGAAGGAGATTTTGTGATGCCAAGGAAGAACTTCCCACTTTTTGACCTAATCTGCAAAAACCCATTACTCATCAAGGCTGGCATCCATGAGTGGACTGATGGGGAGGAGCTTGAGCAGATTCTGCTAAACCTAATCAACTCAATTTCCATTGAAGAAAATGCTCAGTTTCTTTCAGCAGATTGCAAGTTGCAGACTATTTCTGTTGAGGCACTACCTCAAGCTCTCCCTGTCCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

270

Amino Acids

30.11

Weight (kDa)

4.68

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 235	3.2e-95	Putative Phosphatase
HAD	PF12710	6 - 125	1.8e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	3 cut(s)	202, 215, 463
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	100, 182, 316, 476, 562, 722
AluBI	AGCT	5 cut(s)	157, 248, 565, 679, 791
AluI	AGCT	5 cut(s)	157, 248, 565, 679, 791
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	202, 215, 463
AlwNI	CAGNNNCTG	2 cut(s)	441, 691
ApeKI	GCWGC	3 cut(s)	245, 432, 435
Asp700I	GAANNNNTTC	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	390, 406, 542
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BamHI	GGATCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	257, 419, 447
BccI	CCATC	2 cut(s)	527, 662
BciVI	GTATCC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	246, 433, 436
BlsI	GCNGC	3 cut(s)	247, 434, 437
BmiI	GGNNCC	2 cut(s)	85, 209
BmsI	GCATC	4 cut(s)	274, 328, 576, 660
BpiI	GAAGAC	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	701, 771
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	122, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	122, 590
BseGI	GGATG	3 cut(s)	79, 217, 651
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	3 cut(s)	357, 492, 746
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	3 cut(s)	257, 419, 447
BshNI	GGYRCC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	207, 348, 468
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	356, 493, 745
BspLI	GGNNCC	2 cut(s)	85, 209
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	3 cut(s)	202, 215, 463
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	122, 590
BssMI	GATC	3 cut(s)	207, 348, 468
BssT1I	CCWWGG	2 cut(s)	122, 590
Bst4CI	ACNGT	1 cut(s)	407
BstAPI	GCANNNNNTGC	3 cut(s)	251, 441, 691
BstC8I	GCNNGC	2 cut(s)	234, 649
BstDEI	CTNAG	4 cut(s)	343, 389, 501, 732
BstF5I	GGATG	3 cut(s)	79, 217, 651
BstKTI	GATC	3 cut(s)	210, 351, 471
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	207, 348, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 242, 251, 441, 691
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	257, 419, 447
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	79, 217, 651
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	87, 186
Cac8I	GCNNGC	2 cut(s)	234, 649
CaiI	CAGNNNCTG	2 cut(s)	441, 691
CviAII	CATG	6 cut(s)	118, 136, 251, 428, 454, 656
CviJI	RGCY	9 cut(s)	157, 236, 248, 432, 438, 565, 647, 679, 791
CviKI_1	RGCY	9 cut(s)	157, 236, 248, 432, 438, 565, 647, 679, 791
DdeI	CTNAG	4 cut(s)	343, 389, 501, 732
DpnI	GATC	3 cut(s)	209, 350, 470
DpnII	GATC	3 cut(s)	207, 348, 468
Eco130I	CCWWGG	2 cut(s)	122, 590
EcoT14I	CCWWGG	2 cut(s)	122, 590
ErhI	CCWWGG	2 cut(s)	122, 590
FaeI	CATG	6 cut(s)	121, 139, 254, 431, 457, 659
FaiI	YATR	7 cut(s)	119, 137, 252, 369, 429, 455, 657
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	6 cut(s)	117, 135, 250, 427, 453, 655
Fnu4HI	GCNGC	3 cut(s)	246, 433, 436
FokI	GGATG	3 cut(s)	86, 204, 638
Fsp4HI	GCNGC	3 cut(s)	246, 433, 436
GluI	GCNGC	3 cut(s)	246, 433, 436
Hin1II	CATG	6 cut(s)	121, 139, 254, 431, 457, 659
HinfI	GANTC	2 cut(s)	480, 688
HphI	GGTGA	3 cut(s)	390, 406, 542
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	201, 346
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	3 cut(s)	145, 374, 566
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	6 cut(s)	287, 435, 459, 624, 753, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 242, 251, 441, 691
HpyF3I	CTNAG	4 cut(s)	343, 389, 501, 732
Hsp92II	CATG	6 cut(s)	121, 139, 254, 431, 457, 659
Kzo9I	GATC	3 cut(s)	207, 348, 468
LmnI	GCTCC	2 cut(s)	154, 676
LpnPI	CCDG	3 cut(s)	246, 497, 633
Lsp1109I	GCAGC	3 cut(s)	257, 419, 447
LweI	GCATC	4 cut(s)	274, 328, 576, 660
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	209, 350, 470
MboI	GATC	3 cut(s)	207, 348, 468
MboII	GAAGA	5 cut(s)	194, 389, 520, 607, 734
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	7 cut(s)	9, 61, 77, 213, 309, 418, 711
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	2 cut(s)	240, 518
MunI	CAATTG	1 cut(s)	61
MwoI	GCNNNNNNNGC	5 cut(s)	163, 242, 251, 441, 691
NdeII	GATC	3 cut(s)	207, 348, 468
NlaIII	CATG	6 cut(s)	121, 139, 254, 431, 457, 659
NlaIV	GGNNCC	2 cut(s)	85, 209
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	457
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	480, 688
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	247, 434, 437
PscI	ACATGT	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	85, 209
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	441, 691
PsuI	RGATCY	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	240, 518
SatI	GCNGC	3 cut(s)	246, 433, 436
Sau3AI	GATC	3 cut(s)	207, 348, 468
SfaNI	GCATC	4 cut(s)	274, 328, 576, 660
SfcI	CTRYAG	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	680, 786
SmoI	CTYRAG	2 cut(s)	680, 786
Sse9I	AATT	7 cut(s)	9, 61, 77, 213, 309, 418, 711
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	122, 590
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	24
TasI	AATT	7 cut(s)	9, 61, 77, 213, 309, 418, 711
TfiI	GAWTC	2 cut(s)	480, 688
Tru1I	TTAA	2 cut(s)	240, 518
Tru9I	TTAA	2 cut(s)	240, 518
TscAI	CASTG	2 cut(s)	94, 193
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	245, 432, 435
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	90, 164, 206, 390
TspRI	CASTG	2 cut(s)	94, 193
Van91I	CCANNNNNTGG	1 cut(s)	123
XceI	RCATGY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.