Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Forward (+)

50511491 .. 50512808

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTCGGATTTGTGGTGGTTTTCGACTTCGACACTACCATCATCGACAGCGACAGCGACAGCGACAATTTGGTGGTCGATGGGTTGGGTGCCACCGACTTGATGATGAAGGAGCTTCACTCACAAGGAAAAACATATGAGGACATTGTGGAGGTCCTCAAAACAACTTCAATTCATCACAAAATTGTGGCAGCCATTAAAGCAGCTCATGCTTTAGGATGTGATTTGAGGATTACGATTTTGAAGCATCTTGGCTTGGAGGAATATTTCTTAGAAATCAACACTAACCCAGGTTATGTTGATGAAGAAGGAAGGGTTAGGATTTCCCCTTTATGTCATTTCACCAGTTCCCCTATGGGTAGTGTGATAATTGAGAGAATCCAAGCTTCAATTGAAGGAAGGAAAAGGATGATCGACTTGGGTGATGGAGTTGGTAATTATTGCCCTAGCTTGAAGCTAAGGGAAGGAGATTTTGTGATTCCAAGGAAGAATTTCCCGCTTTTCGATAAGATTTTCCAGAACCCTCTGGCTCTTAGGCCTCGTTTGCACATTTTGTTGAACTTGATCAACACAATCGCCGTTGAAGAGAATGATGCTTTACAGACCATCTCTGTTTCTGGCATGAGGCCTTCCCTAAAGCTCTCCCAGTTTAGAAGTAGTGGATTTGAATGGTCATTTTGTATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

229

Amino Acids

25.56

Weight (kDa)

5.49

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	34 - 183	6.4e-31	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	490
AgsI	TTSAA	8 cut(s)	171, 244, 390, 395, 454, 559, 584, 668
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	115, 206, 386, 450, 457, 640
AluI	AGCT	6 cut(s)	115, 206, 386, 450, 457, 640
AoxI	GGCC	2 cut(s)	536, 626
ApeKI	GCWGC	2 cut(s)	191, 203
ApoI	RAATTY	1 cut(s)	490
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	334, 434
AvaII	GGWCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	203, 215
BccI	CCATC	4 cut(s)	47, 74, 419, 614
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	564
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	192, 204
BlsI	GCNGC	2 cut(s)	193, 205
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	256, 583
BmuI	ACTGGG	1 cut(s)	640
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu10I	CCTNAGC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	289, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bse1I	ACTGG	2 cut(s)	345, 646
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	289, 482
BseGI	GGATG	2 cut(s)	224, 414
BseNI	ACTGG	2 cut(s)	345, 646
BseXI	GCAGC	2 cut(s)	203, 215
BshFI	GGCC	2 cut(s)	538, 628
BshNI	GGYRCC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	538, 628
Bsp143I	GATC	2 cut(s)	411, 564
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	2 cut(s)	538, 628
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	345, 646
BssECI	CCNNGG	2 cut(s)	289, 482
BssMI	GATC	2 cut(s)	411, 564
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	271, 458, 533
BstF5I	GGATG	2 cut(s)	224, 414
BstKTI	GATC	2 cut(s)	414, 567
BstMBI	GATC	2 cut(s)	411, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 544
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	203, 215
BsuRI	GGCC	2 cut(s)	538, 628
BtsCI	GGATG	2 cut(s)	224, 414
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	2 cut(s)	209, 622
DdeI	CTNAG	3 cut(s)	271, 458, 533
DpnI	GATC	2 cut(s)	413, 566
DpnII	GATC	2 cut(s)	411, 564
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	482
Eco147I	AGGCCT	2 cut(s)	538, 628
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	212, 625
FaiI	YATR	7 cut(s)	136, 138, 210, 297, 334, 356, 623
FatI	CATG	2 cut(s)	208, 621
FauI	CCCGC	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	192, 204
FokI	GGATG	2 cut(s)	231, 421
Fsp4HI	GCNGC	2 cut(s)	192, 204
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	192, 204
HaeIII	GGCC	2 cut(s)	538, 628
Hin1II	CATG	2 cut(s)	212, 625
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	378, 478
HphI	GGTGA	2 cut(s)	334, 434
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	1 cut(s)	517
HpyAV	CCTTC	7 cut(s)	103, 302, 306, 389, 393, 458, 639
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 544
HpyF3I	CTNAG	3 cut(s)	271, 458, 533
Hsp92II	CATG	2 cut(s)	212, 625
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	411, 564
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	276, 303, 358, 512, 530, 603, 659
Lsp1109I	GCAGC	2 cut(s)	203, 215
LweI	GCATC	2 cut(s)	256, 583
MaeI	CTAG	1 cut(s)	447
MalI	GATC	2 cut(s)	413, 566
MboI	GATC	2 cut(s)	411, 564
MboII	GAAGA	3 cut(s)	317, 499, 596
MfeI	CAATTG	1 cut(s)	390
MluCI	AATT	7 cut(s)	67, 171, 183, 369, 390, 436, 490
MnlI	CCTC	8 cut(s)	133, 145, 167, 222, 253, 534, 549, 618
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 544
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	411, 564
NlaIII	CATG	2 cut(s)	212, 625
NlaIV	GGNNCC	1 cut(s)	91
PceI	AGGCCT	2 cut(s)	538, 628
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	378, 478
PkrI	GCNGC	2 cut(s)	193, 205
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	192, 204
Sau3AI	GATC	2 cut(s)	411, 564
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	8 cut(s)	117, 156, 208, 295, 388, 452, 459, 642
SfaNI	GCATC	2 cut(s)	256, 583
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	7 cut(s)	67, 171, 183, 369, 390, 436, 490
SseBI	AGGCCT	2 cut(s)	538, 628
SsiI	CCGC	1 cut(s)	497
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	447
StuI	AGGCCT	2 cut(s)	538, 628
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	482
TaqI	TCGA	6 cut(s)	24, 30, 45, 78, 414, 504
TasI	AATT	7 cut(s)	67, 171, 183, 369, 390, 436, 490
TfiI	GAWTC	2 cut(s)	378, 478
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	2 cut(s)	191, 203
TspDTI	ATGAA	3 cut(s)	122, 164, 318
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.