Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

11898252 .. 11899283

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCCGGAATTGTGGTGGTTTTCGACTTTGACAATACCATCATCGACTGCGACAGCGACAACTTTGTCATCGACGGGTTGGGTGCCACCGACTTGTTCAATGAGCTCCTCCCCACCATGCCATGGAACTCACTCATGGCTAGGATGATGAAGGAGCTTCATTCACGAGGAAAAACAAACGAGGACATTGTGGAGGTGCTCAGAACGACTCCTATTCATCACAGAATTGTGGCAGCCATTAAAGCAGCTCATGCTTTAGGATGTGATTTGAGGATTGTGAGTGATGCGAATGTGTTTTTCATCGAGACGATTTTGAAGCATCTTGGTCTGGAGGAATGTTTCTCAGAAATCAACACTAACCCAGGTTACGTTGATGAAGAAGGAAGGGTTAGGATTTCACCTTTCTGTGACTTCACCAGTTCCCCTCATGGGTGTAGCCTCTGCCCTCCTAACATGTGCAAGAGTGTGATAACTGAGAGAATCCAAGCTTCAACTGAAGGAAGGAAAAGAATGATATACTTGGGTGATGGAGTTGGTGATTATTGCCCAAGCTTGAAGCTGAGGGAAGGAGATTTTGTGATGCCAAGGAAGAATTTCCCGCTTTTCGATAAGATCTGCCAGAACCCCCTGGCTCTTAAGGCTGAGATTCATGAGTGGACCGATGGGGAAGAGTTTGAGCACATTTTGCTCAATTTGATCAACACAATCGCCATTGAACAAAATGCTGCTGCTCAGTTAATTACAACTGACTGCAAGTTACAGACCATCTCTGTTTCCGGTCATGAGGCCTTCCGTAAAGCTCTCCCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

270

Amino Acids

30.14

Weight (kDa)

5.11

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 233	4.5e-91	Putative Phosphatase
HAD	PF12710	6 - 129	1.1e-08	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	123, 429
AflII	CTTAAG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	100, 316, 492, 556, 716
AjnI	CCWGG	2 cut(s)	361, 627
AluBI	AGCT	7 cut(s)	106, 157, 248, 488, 552, 559, 800
AluI	AGCT	7 cut(s)	106, 157, 248, 488, 552, 559, 800
Alw21I	GWGCWC	3 cut(s)	108, 201, 681
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	3, 786
ApeKI	GCWGC	4 cut(s)	233, 245, 725, 728
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	657
AsuHPI	GGTGA	4 cut(s)	390, 406, 536, 548
AvaII	GGWCC	1 cut(s)	657
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	3 cut(s)	108, 201, 681
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	4 cut(s)	245, 257, 712, 715
BccI	CCATC	4 cut(s)	47, 521, 656, 773
BciT130I	CCWGG	2 cut(s)	363, 629
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	635
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	4 cut(s)	234, 246, 726, 729
BlsI	GCNGC	4 cut(s)	235, 247, 727, 730
Bme1390I	CCNGG	2 cut(s)	363, 629
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	363, 629
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	3 cut(s)	274, 328, 570
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	122, 361, 584, 627
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 429
Bse1I	ACTGG	2 cut(s)	417, 806
BseBI	CCWGG	2 cut(s)	363, 629
BseDI	CCNNGG	4 cut(s)	122, 361, 584, 627
BseGI	GGATG	2 cut(s)	150, 266
BseLI	CCNNNNNNNGG	2 cut(s)	123, 429
BseMII	CTCAG	6 cut(s)	214, 357, 465, 551, 633, 746
BseNI	ACTGG	2 cut(s)	417, 806
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	245, 257, 712, 715
BshFI	GGCC	2 cut(s)	5, 788
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	3 cut(s)	108, 201, 681
BsiSI	CCGG	2 cut(s)	6, 777
BslI	CCNNNNNNNGG	2 cut(s)	123, 429
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	5, 788
Bsp1286I	GDGCHC	3 cut(s)	108, 201, 681
Bsp143I	GATC	2 cut(s)	612, 696
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	2 cut(s)	5, 788
BspCNI	CTCAG	6 cut(s)	213, 356, 466, 552, 634, 745
BspHI	TCATGA	2 cut(s)	649, 781
BspLI	GGNNCC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	635
BsrI	ACTGG	2 cut(s)	417, 806
BssECI	CCNNGG	4 cut(s)	122, 361, 584, 627
BssMI	GATC	2 cut(s)	612, 696
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	122, 584
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	363, 629
Bst6I	CTCTTC	1 cut(s)	663
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	2 cut(s)	251, 685
BstDEI	CTNAG	6 cut(s)	200, 343, 474, 560, 642, 732
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	150, 266
BstKTI	GATC	2 cut(s)	615, 699
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	2 cut(s)	612, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 251, 638, 685
BstNI	CCWGG	2 cut(s)	363, 629
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	361, 627
BstV1I	GCAGC	4 cut(s)	245, 257, 712, 715
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	5, 788
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	150, 266
CciI	TCATGA	2 cut(s)	649, 781
Cfr13I	GGNCC	1 cut(s)	657
CviAII	CATG	8 cut(s)	118, 123, 136, 251, 428, 454, 650, 782
DdeI	CTNAG	6 cut(s)	200, 343, 474, 560, 642, 732
DpnI	GATC	2 cut(s)	614, 698
DpnII	GATC	2 cut(s)	612, 696
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	122, 584
Eco147I	AGGCCT	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	361, 627
EcoT14I	CCWWGG	2 cut(s)	122, 584
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	122, 584
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	8 cut(s)	121, 126, 139, 254, 431, 457, 653, 785
FaiI	YATR	9 cut(s)	119, 124, 137, 252, 429, 455, 517, 651, 783
FatI	CATG	8 cut(s)	117, 122, 135, 250, 427, 453, 649, 781
FauI	CCCGC	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	4 cut(s)	234, 246, 726, 729
FokI	GGATG	2 cut(s)	157, 273
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	4 cut(s)	234, 246, 726, 729
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	4 cut(s)	234, 246, 726, 729
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	5, 788
HapII	CCGG	2 cut(s)	6, 777
Hin1II	CATG	8 cut(s)	121, 126, 139, 254, 431, 457, 653, 785
HindIII	AAGCTT	2 cut(s)	486, 550
HinfI	GANTC	3 cut(s)	208, 480, 646
HpaII	CCGG	2 cut(s)	6, 777
HphI	GGTGA	4 cut(s)	390, 406, 536, 548
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	2 cut(s)	203, 346
Hpy188III	TCNNGA	5 cut(s)	165, 304, 329, 650, 782
Hpy8I	GTNNAC	1 cut(s)	657
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	7 cut(s)	145, 374, 378, 491, 495, 560, 799
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	459, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 251, 638, 685
HpyF3I	CTNAG	6 cut(s)	200, 343, 474, 560, 642, 732
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	8 cut(s)	121, 126, 139, 254, 431, 457, 653, 785
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	612, 696
LmnI	GCTCC	2 cut(s)	111, 154
LpnPI	CCDG	9 cut(s)	19, 314, 348, 375, 430, 614, 632, 641, 790
Lsp1109I	GCAGC	4 cut(s)	245, 257, 712, 715
LweI	GCATC	3 cut(s)	274, 328, 570
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	365, 407, 756
MalI	GATC	2 cut(s)	614, 698
MboI	GATC	2 cut(s)	612, 696
MboII	GAAGA	3 cut(s)	389, 601, 680
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	3 cut(s)	108, 201, 681
MluCI	AATT	5 cut(s)	9, 225, 592, 691, 738
MlyI	GAGTC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	3 cut(s)	240, 636, 737
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	2 cut(s)	6, 777
MspR9I	CCNGG	2 cut(s)	363, 629
MvaI	CCWGG	2 cut(s)	363, 629
MwoI	GCNNNNNNNGC	4 cut(s)	242, 251, 638, 685
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	612, 696
NlaIII	CATG	8 cut(s)	121, 126, 139, 254, 431, 457, 653, 785
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	2 cut(s)	649, 781
PceI	AGGCCT	1 cut(s)	788
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	480, 646
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	235, 247, 727, 730
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	361, 627
PspGI	CCWGG	2 cut(s)	361, 627
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	240, 636, 737
SatI	GCNGC	4 cut(s)	234, 246, 726, 729
Sau3AI	GATC	2 cut(s)	612, 696
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	363, 629
SduI	GDGCHC	3 cut(s)	108, 201, 681
SfaNI	GCATC	3 cut(s)	274, 328, 570
SinI	GGWCC	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	5 cut(s)	9, 225, 592, 691, 738
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	788
StyD4I	CCNGG	2 cut(s)	361, 627
StyI	CCWWGG	2 cut(s)	122, 584
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	5 cut(s)	24, 45, 72, 303, 606
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	5 cut(s)	9, 225, 592, 691, 738
TfiI	GAWTC	2 cut(s)	480, 646
Tru1I	TTAA	3 cut(s)	240, 636, 737
Tru9I	TTAA	3 cut(s)	240, 636, 737
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	233, 245, 725, 728
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	6 cut(s)	149, 164, 206, 289, 390, 638
TspGWI	ACGGA	1 cut(s)	782
Van91I	CCANNNNNTGG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.