Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

24063437 .. 24064330

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGTTAGAAATATTCCAAGAAGTTAGGCAACAGGAAACCATCAACATAGGATTTCAGCCGGGTGGGATTTGCTCAAAATTTGGGATCAAGAAGGATGACTATCTTAAACGATGGGAATGTCTCTTCTGCTCGCTAAAGGCACTTTCAAAAGCGACACATTGTCATATCTTTCTTGACGAAAACACTTTTACTGCTGTGACTGCTGTGGGTAGCTCAGTTGAAAGAATTTCTCAGCTGAAGGCTGTTGTGGAAGACTGTATAACCAAGAATCTGTGTCCTAAGACCTCTATTAGGAGATTTGAAACTGAAGTTGTAATGTATCAATCGATGGATGATCTTGATGATCCACATGCCAAGCACACGGAATGCTTGAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTCTATGCGTTACTCCATGAAAGACGAGTATCGAAGTTGCAAGAATCTTTGCCAATGCTCGAGTCTTCCCTAAGGAACTATGGCATTTCATATACTCTGGATAAGAATTCGATGGTATTGTCAGCAACCAGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCCATGGCAATAGAATTATTGGATTGCCGGCAAACTTGCCTTGTCAAAATTGGGAATCAAGAAGGTGGACTCTGCTCATTATTTGGGATCAAGGAGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTCATGTATTTCTTAACGATAACACTGTTGCTGCTGTGGGGGAAACCTCAGTAGTAATGATCAAGCAGTTGGTGGAAAACTGCATTCTTCAAGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

297

Amino Acids

33.54

Weight (kDa)

5.29

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	892
Acc65I	GGTACC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	557
AclWI	GGATC	3 cut(s)	95, 341, 725
AcsI	RAATTY	3 cut(s)	80, 228, 529
AcuI	CTGAAG	3 cut(s)	260, 330, 801
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	2 cut(s)	294, 391
AgsI	TTSAA	7 cut(s)	150, 224, 305, 376, 413, 602, 884
AhdI	GACNNNNNGTC	1 cut(s)	162
AluBI	AGCT	3 cut(s)	216, 238, 595
AluI	AGCT	3 cut(s)	216, 238, 595
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	95, 341, 725
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	592, 824
ApoI	RAATTY	3 cut(s)	80, 228, 529
Asp700I	GAANNNNTTC	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	557
BbsI	GAAGAC	3 cut(s)	261, 480, 746
BbvI	GCAGC	2 cut(s)	604, 811
BccI	CCATC	6 cut(s)	50, 108, 325, 395, 529, 738
BclI	TGATCA	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	767
BisI	GCNGC	2 cut(s)	593, 825
BlsI	GCNGC	2 cut(s)	594, 826
Bme1390I	CCNGG	1 cut(s)	63
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	559, 567
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	638
BpiI	GAAGAC	3 cut(s)	261, 480, 746
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	561, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 391
Bse118I	RCCGGY	1 cut(s)	657
Bse21I	CCTNAGG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	561, 633
BseGI	GGATG	3 cut(s)	103, 340, 629
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	294, 391
BseMII	CTCAG	3 cut(s)	231, 248, 855
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	604, 811
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	62, 658
BslI	CCNNNNNNNGG	2 cut(s)	294, 391
BsmAI	GTCTC	1 cut(s)	128
BsmI	GAATGC	3 cut(s)	374, 411, 876
BsnI	GGCC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	87, 337, 346, 717, 852
Bsp19I	CCATGG	1 cut(s)	633
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	230, 247, 854
BspDI	ATCGAT	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	559, 567
BspPI	GGATC	3 cut(s)	95, 341, 725
BspT107I	GGYRCC	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	657
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	561, 633
BssMI	GATC	5 cut(s)	87, 337, 346, 717, 852
BssT1I	CCWWGG	2 cut(s)	561, 633
Bst4CI	ACNGT	3 cut(s)	260, 737, 820
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	134, 422, 659
BstDEI	CTNAG	5 cut(s)	217, 234, 282, 494, 841
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	103, 340, 629
BstKTI	GATC	5 cut(s)	90, 340, 349, 720, 855
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	87, 337, 346, 717, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 635
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	604, 811
BstV2I	GAAGAC	3 cut(s)	261, 480, 746
Bsu15I	ATCGAT	1 cut(s)	329
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	384
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	103, 340, 629
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	3 cut(s)	134, 422, 659
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	5 cut(s)	353, 440, 620, 634, 797
CviJI	RGCY	8 cut(s)	61, 216, 238, 245, 384, 568, 587, 595
CviKI_1	RGCY	8 cut(s)	61, 216, 238, 245, 384, 568, 587, 595
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	5 cut(s)	217, 234, 282, 494, 841
DpnI	GATC	5 cut(s)	89, 339, 348, 719, 854
DpnII	GATC	5 cut(s)	87, 337, 346, 717, 852
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	561, 633
Eco32I	GATATC	1 cut(s)	574
Eco57I	CTGAAG	3 cut(s)	260, 330, 801
Eco81I	CCTNAGG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	561, 633
ErhI	CCWWGG	2 cut(s)	561, 633
FaeI	CATG	5 cut(s)	356, 443, 623, 637, 800
FatI	CATG	5 cut(s)	352, 439, 619, 633, 796
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	593, 825
FokI	GGATG	3 cut(s)	110, 347, 616
Fsp4HI	GCNGC	2 cut(s)	593, 825
GluI	GCNGC	2 cut(s)	593, 825
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	2 cut(s)	62, 658
Hin1II	CATG	5 cut(s)	356, 443, 623, 637, 800
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	5 cut(s)	271, 467, 485, 685, 699
HpaII	CCGG	2 cut(s)	62, 658
Hpy166II	GTNNAC	3 cut(s)	612, 698, 740
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	6 cut(s)	91, 176, 341, 521, 689, 884
Hpy8I	GTNNAC	3 cut(s)	612, 698, 740
HpyAV	CCTTC	3 cut(s)	88, 235, 686
HpyCH4III	ACNGT	3 cut(s)	260, 737, 820
HpyCH4V	TGCA	2 cut(s)	463, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 635
HpyF3I	CTNAG	5 cut(s)	217, 234, 282, 494, 841
Hsp92II	CATG	5 cut(s)	356, 443, 623, 637, 800
KpnI	GGTACC	1 cut(s)	561
KroI	GCCGGC	1 cut(s)	657
KroNI	GCCGGC	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	87, 337, 346, 717, 852
LmnI	GCTCC	2 cut(s)	565, 600
LpnPI	CCDG	8 cut(s)	20, 75, 366, 506, 565, 582, 639, 671
Lsp1109I	GCAGC	2 cut(s)	604, 811
LweI	GCATC	1 cut(s)	638
MaeIII	GTNAC	2 cut(s)	199, 432
MalI	GATC	5 cut(s)	89, 339, 348, 719, 854
MboI	GATC	5 cut(s)	87, 337, 346, 717, 852
MboII	GAAGA	5 cut(s)	118, 266, 480, 746, 872
MluCI	AATT	6 cut(s)	80, 228, 529, 644, 678, 887
MlyI	GAGTC	2 cut(s)	494, 693
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	298, 548, 718, 721, 850
MroNI	GCCGGC	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	2 cut(s)	108, 807
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	62, 658
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	3 cut(s)	374, 411, 876
MwoI	GCNNNNNNNGC	2 cut(s)	203, 635
NaeI	GCCGGC	1 cut(s)	659
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	5 cut(s)	87, 337, 346, 717, 852
NgoMIV	GCCGGC	1 cut(s)	657
NlaIII	CATG	5 cut(s)	356, 443, 623, 637, 800
NlaIV	GGNNCC	2 cut(s)	559, 567
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PctI	GAATGC	3 cut(s)	374, 411, 876
PdiI	GCCGGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	271, 467, 685
PkrI	GCNGC	2 cut(s)	594, 826
PleI	GAGTC	2 cut(s)	493, 693
PpsI	GAGTC	2 cut(s)	493, 693
PsiI	TTATAA	1 cut(s)	892
PspN4I	GGNNCC	2 cut(s)	559, 567
PspPI	GGNCC	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	108, 807
SatI	GCNGC	2 cut(s)	593, 825
Sau3AI	GATC	5 cut(s)	87, 337, 346, 717, 852
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	494, 693
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	7 cut(s)	218, 240, 290, 559, 597, 697, 842
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	1 cut(s)	767
Sfr274I	CTCGAG	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	6 cut(s)	80, 228, 529, 644, 678, 887
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	2 cut(s)	561, 633
TaaI	ACNGT	3 cut(s)	260, 737, 820
TaqI	TCGA	4 cut(s)	329, 455, 483, 533
TasI	AATT	6 cut(s)	80, 228, 529, 644, 678, 887
TfiI	GAWTC	3 cut(s)	271, 467, 685
Tru1I	TTAA	2 cut(s)	108, 807
Tru9I	TTAA	2 cut(s)	108, 807
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	592, 824
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	456, 501
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	823
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	3 cut(s)	80, 228, 529
XceI	RCATGY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.