Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

24636982 .. 24638686

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATCATCGACTGCGACAGCGACAACTGGGTCGTCGATGGGTTGGGTGCCACTGACTTGTTCAATCAGCTCCTCCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTTACAAGGAAAAACGATTGAGGACATTGTGGAGGTGCTCAAAAGGACTCCAATTCATCCCAGAATTGTGCCGGCCATTAAAGCAGTCCATGCTTTAGGATGTGATTTAAGGATTGTGAGCGATGCAAATCTGTTTTTCATTGAGACGATTTTGAAGCATCTTGGTCTGGAGGAATATTTCTCAGAAATCAACACTAACCCAGGTTATGTTGATGAAGAAGGAAGGAGTGTGATAATTGAGAGAATCCAAGCTTCGACTGAAGGGAGGAAAAGGATGATCTACTTGGGTGATGGAGTTGGTGATTACTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTCGTAATGCCAAGGAAGAATTTCCCACTTTTTGATAAGATTTGCCAGAATCCTCTGGCTCTGAAGGCCGAGATTCATGAGTGGACTGATGGAGAAGAGCTTGAGCACATTTTGCTCAACCTGATCAACACAATCGCCGTGGAAGAGAGTGCTGCTGCTCAGTTCATTACGACTGACTGCAAGTTACAGACCATCTCTGTTTCTGGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

247

Amino Acids

27.76

Weight (kDa)

4.83

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 130	8.4e-51	Putative Phosphatase
HAD	PF12710	6 - 156	3.6e-09	haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	57 - 155	3.3e-07	haloacid dehalogenase-like hydrolase
Put_Phosphatase	PF06888	131 - 208	2.7e-25	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	2 cut(s)	441, 581
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	100, 316, 481
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	7 cut(s)	106, 157, 413, 477, 484, 598, 725
AluI	AGCT	7 cut(s)	106, 157, 413, 477, 484, 598, 725
Alw21I	GWGCWC	2 cut(s)	201, 606
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	3 cut(s)	234, 564, 711
ApeKI	GCWGC	2 cut(s)	650, 653
ApoI	RAATTY	1 cut(s)	517
Asp700I	GAANNNNTTC	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	461, 473
BanI	GGYRCC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	201, 606
BbvI	GCAGC	2 cut(s)	637, 640
BccI	CCATC	5 cut(s)	47, 68, 446, 581, 698
BceAI	ACGGC	1 cut(s)	620
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	651, 654
BlsI	GCNGC	2 cut(s)	652, 655
Bme1390I	CCNGG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	73, 725
BmsI	GCATC	2 cut(s)	274, 328
BmuI	ACTGGG	2 cut(s)	73, 725
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	470, 620
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	122, 361, 509, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	68, 731
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	122, 361, 509, 636
BseGI	GGATG	4 cut(s)	150, 217, 266, 441
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	357, 671
BseNI	ACTGG	2 cut(s)	68, 731
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	637, 640
BshFI	GGCC	3 cut(s)	236, 566, 713
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	201, 606
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	236, 566, 713
Bsp1286I	GDGCHC	2 cut(s)	201, 606
Bsp143I	GATC	2 cut(s)	438, 621
BspANI	GGCC	3 cut(s)	236, 566, 713
BspCNI	CTCAG	2 cut(s)	356, 670
BspHI	TCATGA	2 cut(s)	574, 706
BspLI	GGNNCC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	68, 731
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	4 cut(s)	122, 361, 509, 636
BssMI	GATC	2 cut(s)	438, 621
BssT1I	CCWWGG	2 cut(s)	122, 509
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	588, 636
BstAPI	GCANNNNNTGC	2 cut(s)	251, 610
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	343, 657
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	150, 217, 266, 441
BstKTI	GATC	2 cut(s)	441, 624
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	2 cut(s)	438, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 251, 563, 610
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	637, 640
BsuRI	GGCC	3 cut(s)	236, 566, 713
BtgI	CCRYGG	1 cut(s)	636
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	150, 217, 266, 441
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	2 cut(s)	574, 706
Cfr10I	RCCGGY	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	5 cut(s)	118, 136, 251, 575, 707
DdeI	CTNAG	2 cut(s)	343, 657
DpnI	GATC	2 cut(s)	440, 623
DpnII	GATC	2 cut(s)	438, 621
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	588, 636
EarI	CTCTTC	2 cut(s)	588, 636
Eco130I	CCWWGG	2 cut(s)	122, 509
Eco147I	AGGCCT	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	441, 581
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	122, 509
ErhI	CCWWGG	2 cut(s)	122, 509
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	5 cut(s)	121, 139, 254, 578, 710
FaiI	YATR	6 cut(s)	119, 137, 252, 369, 576, 708
FatI	CATG	5 cut(s)	117, 135, 250, 574, 706
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	651, 654
FokI	GGATG	4 cut(s)	157, 204, 273, 448
Fsp4HI	GCNGC	2 cut(s)	651, 654
GluI	GCNGC	2 cut(s)	651, 654
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	236, 566, 713
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	5 cut(s)	121, 139, 254, 578, 710
HindIII	AAGCTT	2 cut(s)	411, 475
HinfI	GANTC	4 cut(s)	208, 405, 547, 571
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	461, 473
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	2 cut(s)	346, 561
Hpy188III	TCNNGA	3 cut(s)	329, 575, 707
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	7 cut(s)	145, 374, 378, 416, 485, 556, 724
HpyCH4V	TGCA	2 cut(s)	287, 678
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 251, 563, 610
HpyF3I	CTNAG	2 cut(s)	343, 657
Hsp92II	CATG	5 cut(s)	121, 139, 254, 578, 710
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	438, 621
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	111, 154
Lsp1109I	GCAGC	2 cut(s)	637, 640
LweI	GCATC	2 cut(s)	274, 328
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	2 cut(s)	440, 623
MboI	GATC	2 cut(s)	438, 621
MboII	GAAGA	4 cut(s)	389, 526, 605, 653
MhlI	GDGCHC	2 cut(s)	201, 606
MluCI	AATT	5 cut(s)	9, 213, 225, 396, 517
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	119, 175, 187, 325, 420, 561, 703
MroNI	GCCGGC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	240, 269
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	242, 251, 563, 610
NaeI	GCCGGC	1 cut(s)	234
NdeII	GATC	2 cut(s)	438, 621
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	121, 139, 254, 578, 710
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	592
PagI	TCATGA	2 cut(s)	574, 706
PceI	AGGCCT	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	588
PdiI	GCCGGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	405, 547, 571
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	652, 655
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	240, 269
SatI	GCNGC	2 cut(s)	651, 654
Sau3AI	GATC	2 cut(s)	438, 621
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	201, 606
SfaNI	GCATC	2 cut(s)	274, 328
SmlI	CTYRAG	2 cut(s)	485, 599
SmoI	CTYRAG	2 cut(s)	485, 599
Sse9I	AATT	5 cut(s)	9, 213, 225, 396, 517
SseBI	AGGCCT	1 cut(s)	713
SspI	AATATT	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	122, 509
TaqI	TCGA	3 cut(s)	45, 72, 416
TasI	AATT	5 cut(s)	9, 213, 225, 396, 517
TfiI	GAWTC	3 cut(s)	405, 547, 571
Tru1I	TTAA	2 cut(s)	240, 269
Tru9I	TTAA	2 cut(s)	240, 269
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	650, 653
TspDTI	ATGAA	7 cut(s)	149, 164, 206, 289, 390, 563, 652
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.