Prupe.3G052000_v2.0.a1

Inorganic pyrophosphatase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
3671403 .. 3673194
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G052000.1

Sequence Viewer

Length: 819 bp
ATGGCTGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATTATTGAGTGTGATAGTGATAACTGGGTGGTGGATGAGTTGGGTGCAACTGATTTGTTCAATCAACTTCTTCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGGAGGAGCTTCATTCACAAGGAAAAACCATTGAAGACATTGCAGAGGTTCTGAAAAGGACTCCAATTCATCCTAGAGTTGTCCCAGCAATTAAAGCAGCCCATGCTTTGGGGTGTGATTTGAGGATTGTTAGTGATGCAAATCTGTTTTTCATTGAGACAATCTTGAACCATCTTGGGCTGGAGGAGTATTTCTCAGAGATCAACACCAACCCAAGCTATGTTGATGAACAAGGAAGGCTTAGGATTTCTCCTCACCATGATTTCACCAAATTCTCTCATGGCTGCAGCCTCTGCCCTCCCAACATGTGCAAGGGTGTGGTCATTGAAAGAATCCAAACTTCTGTAAGCACTGAAGGGAAGAAGAAGATAATCTATCTTGGAGACGGCAGTGGAGATTATTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTTGTAATGCCAAGGAAAAACTTCCCACTGTTTGATCTAATCTGCAAGGACCCTTTGCTCATCAAGGCAGGCATCCATGAGTGGACTGATGGGGAGGAGCTTGAGCAGATTCTGCTCAGCCTCATCAACACAATTTCCATGGAGGAAAATGCTCAGTTTATCTCAGCTGATTGCAAGTTGCAGACCATCTCTGCTTCTGCTCATGAGGCCTTTCCTAAGGCTCTCCCTGTTCAGCAATAG

Protein Analysis

273

Amino Acids

30.49

Weight (kDa)

4.91

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 123, 256
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 522
AfiI CCNNNNNNNGG 2 cut(s) 123, 256
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 5 cut(s) 100, 182, 316, 476, 562
AluBI AGCT 6 cut(s) 157, 366, 558, 565, 679, 746
AluI AGCT 6 cut(s) 157, 366, 558, 565, 679, 746
Alw26I GTCTC 2 cut(s) 299, 525
AlwNI CAGNNNCTG 2 cut(s) 441, 691
AoxI GGCC 1 cut(s) 786
ApeKI GCWGC 3 cut(s) 245, 432, 435
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 599
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 395, 406
AvaII GGWCC 1 cut(s) 628
AxyI CCTNAGG 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 257, 419, 447
BccI CCATC 4 cut(s) 142, 327, 662, 773
BceAI ACGGC 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 299, 525
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 3 cut(s) 246, 433, 436
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 3 cut(s) 247, 434, 437
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 274, 660
BmuI ACTGGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 551, 701
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 122, 590, 717
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 256
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 122, 590, 717
BseGI GGATG 4 cut(s) 79, 150, 217, 651
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 123, 256
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 4 cut(s) 357, 709, 746, 756
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 4 cut(s) 167, 347, 390, 689
BseXI GCAGC 3 cut(s) 257, 419, 447
BseYI CCCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 788
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 123, 256
BsmAI GTCTC 2 cut(s) 299, 525
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 788
Bsp143I GATC 2 cut(s) 348, 613
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp19I CCATGG 1 cut(s) 717
BspANI GGCC 1 cut(s) 788
BspCNI CTCAG 4 cut(s) 356, 708, 745, 755
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 1 cut(s) 630
BspMAI CTGCAG 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 122, 590, 717
BssMI GATC 2 cut(s) 348, 613
BssT1I CCWWGG 3 cut(s) 122, 590, 717
Bst4CI ACNGT 1 cut(s) 609
BstAPI GCANNNNNTGC 3 cut(s) 251, 441, 691
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 6 cut(s) 343, 389, 695, 732, 742, 795
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 4 cut(s) 79, 150, 217, 651
BstKTI GATC 2 cut(s) 351, 616
BstMAI GTCTC 2 cut(s) 299, 525
BstMBI GATC 2 cut(s) 348, 613
BstMWI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 691, 785
BstNSI RCATGY 1 cut(s) 457
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 257, 419, 447
BstV2I GAAGAC 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 795
BsuRI GGCC 1 cut(s) 788
BtgI CCRYGG 1 cut(s) 717
BtsCI GGATG 4 cut(s) 79, 150, 217, 651
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 498, 544, 605
Cac8I GCNNGC 1 cut(s) 649
CaiI CAGNNNCTG 2 cut(s) 441, 691
CciI TCATGA 1 cut(s) 781
Cfr13I GGNCC 1 cut(s) 628
CviAII CATG 9 cut(s) 118, 136, 251, 407, 428, 454, 656, 718, 782
DdeI CTNAG 6 cut(s) 343, 389, 695, 732, 742, 795
DpnI GATC 2 cut(s) 350, 615
DpnII GATC 2 cut(s) 348, 613
Eco130I CCWWGG 3 cut(s) 122, 590, 717
Eco147I AGGCCT 1 cut(s) 788
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 795
EcoO109I RGGNCCY 1 cut(s) 628
EcoT14I CCWWGG 3 cut(s) 122, 590, 717
ErhI CCWWGG 3 cut(s) 122, 590, 717
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 9 cut(s) 121, 139, 254, 410, 431, 457, 659, 721, 785
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 1 cut(s) 215
FatI CATG 9 cut(s) 117, 135, 250, 406, 427, 453, 655, 717, 781
Fnu4HI GCNGC 3 cut(s) 246, 433, 436
FokI GGATG 4 cut(s) 86, 157, 204, 638
Fsp4HI GCNGC 3 cut(s) 246, 433, 436
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 246, 433, 436
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 1 cut(s) 788
Hin1II CATG 9 cut(s) 121, 139, 254, 410, 431, 457, 659, 721, 785
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 3 cut(s) 208, 480, 688
HphI GGTGA 2 cut(s) 395, 406
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 2 cut(s) 201, 346
Hpy188III TCNNGA 2 cut(s) 313, 782
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 3 cut(s) 378, 497, 566
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4V TGCA 8 cut(s) 86, 191, 287, 435, 459, 624, 753, 760
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 691, 785
HpyF3I CTNAG 6 cut(s) 343, 389, 695, 732, 742, 795
Hsp92II CATG 9 cut(s) 121, 139, 254, 410, 431, 457, 659, 721, 785
Kzo9I GATC 2 cut(s) 348, 613
LmnI GCTCC 2 cut(s) 154, 676
LpnPI CCDG 4 cut(s) 49, 246, 314, 633
Lsp1109I GCAGC 3 cut(s) 257, 419, 447
LweI GCATC 2 cut(s) 274, 660
MaeI CTAG 1 cut(s) 222
MalI GATC 2 cut(s) 350, 615
MboI GATC 2 cut(s) 348, 613
MboII GAAGA 5 cut(s) 101, 194, 520, 523, 526
MluCI AATT 5 cut(s) 9, 213, 237, 419, 711
MlyI GAGTC 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 746
MwoI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 691, 785
NcoI CCATGG 1 cut(s) 717
NdeII GATC 2 cut(s) 348, 613
NlaIII CATG 9 cut(s) 121, 139, 254, 410, 431, 457, 659, 721, 785
NlaIV GGNNCC 1 cut(s) 630
NspI RCATGY 1 cut(s) 457
PagI TCATGA 1 cut(s) 781
PceI AGGCCT 1 cut(s) 788
PciI ACATGT 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 480, 688
PflMI CCANNNNNTGG 2 cut(s) 123, 256
PkrI GCNGC 3 cut(s) 247, 434, 437
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 628
PscI ACATGT 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 628
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 437
PstNI CAGNNNCTG 2 cut(s) 441, 691
PvuII CAGCTG 1 cut(s) 746
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 3 cut(s) 246, 433, 436
Sau3AI GATC 2 cut(s) 348, 613
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 1 cut(s) 202
SetI ASST 7 cut(s) 159, 198, 368, 560, 567, 681, 748
SfaNI GCATC 2 cut(s) 274, 660
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 566, 680
SmoI CTYRAG 2 cut(s) 566, 680
Sse9I AATT 5 cut(s) 9, 213, 237, 419, 711
SseBI AGGCCT 1 cut(s) 788
SspMI CTAG 1 cut(s) 222
StuI AGGCCT 1 cut(s) 788
StyI CCWWGG 3 cut(s) 122, 590, 717
TaaI ACNGT 1 cut(s) 609
TasI AATT 5 cut(s) 9, 213, 237, 419, 711
TfiI GAWTC 2 cut(s) 480, 688
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 505, 544, 612
TseI GCWGC 3 cut(s) 245, 432, 435
TspDTI ATGAA 4 cut(s) 149, 206, 289, 390
TspRI CASTG 3 cut(s) 505, 544, 612
Van91I CCANNNNNTGG 2 cut(s) 123, 256
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.