Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

23676950 .. 23677710

Gene Structure 761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCGGTGTTGTTGTGATTTTCGACTTCGACAATACCATTATCGACTGCGACAGTGACAAGCTGGTCGTCGACGGGTTGGGTGCCACCGACTTGTTCAATGAGCTCCTCCCCACCATGCCATGGAACTCTCTCATGGATCGCATGATGAAAGAGCTTCACTCCCAAGGAAAGACAATCGAGGATATTGTGGAGGTGCTCAAAACGACTCCGATTCATCCCAGAATTGTGGCAGCCATTAAAACAGCTCATGCTTTAGGATGTGATTTGAGGATTGTGAGTGATGCGAATGTCTTCTGCCCTCCTAACATGTGCAAGAGTGTGATAACTGAGGGAATCCGAGCTTCGATTGAAGGAAGGAAAAGAATGATCTACTTGGGTGACGGAGTCGGTGATTATTGCCCAAGCCTAAATCTGAGGGAAGGTGATTTCGTAATGCCAAGGAAGAATTTCCCGGTTTTTGATAAGATTTGCCAAAACCCTCTGGCTCTTAAGGCTGAGATTCATGAGTGGACTGATGGGGAAGAGTTTGAGCATATTTTGCTCAAGTTGATCAACAGGATCACCATTGAAGAGACTACAGCTGCTCAGTTCATTACGACTGACTTCAAGTTAGAGACCCTCTCTGTTTCCGGTCATGAGGTATTCCATAAAGCTCTTCCAGTTTTGCAGCAGTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

228

Amino Acids

25.5

Weight (kDa)

5.05

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	5 - 99	4.9e-34	Putative Phosphatase
Put_Phosphatase	PF06888	100 - 185	1.7e-29	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	147, 569
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	100, 353, 572, 610
AluBI	AGCT	7 cut(s)	64, 106, 157, 248, 344, 584, 656
AluI	AGCT	7 cut(s)	64, 106, 157, 248, 344, 584, 656
Alw21I	GWGCWC	2 cut(s)	108, 201
Alw26I	GTCTC	2 cut(s)	569, 611
AlwI	GGATC	2 cut(s)	147, 569
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	233, 584, 670
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	2 cut(s)	293, 449
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	392, 404, 437, 556
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	108, 201
BbvI	GCAGC	2 cut(s)	245, 571
BccI	CCATC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	569, 611
BfmI	CTRYAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	3 cut(s)	234, 585, 671
BlsI	GCNGC	3 cut(s)	235, 586, 672
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	286
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 608, 640
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	122, 166, 440
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	122, 166, 440
BseGI	GGATG	2 cut(s)	217, 266
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	4 cut(s)	321, 407, 489, 602
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	245, 571
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	108, 201
BsiSI	CCGG	3 cut(s)	6, 455, 633
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	569, 611
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	108, 201
Bsp143I	GATC	4 cut(s)	139, 369, 552, 561
Bsp19I	CCATGG	1 cut(s)	122
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	322, 408, 490, 601
BspHI	TCATGA	2 cut(s)	505, 637
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	147, 569
BspQI	GCTCTTC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	122, 166, 440
BssMI	GATC	4 cut(s)	139, 369, 552, 561
BssT1I	CCWWGG	3 cut(s)	122, 166, 440
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	519, 567, 663
BstAFI	CTTAAG	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstDEI	CTNAG	4 cut(s)	330, 416, 498, 588
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	217, 266
BstKTI	GATC	4 cut(s)	142, 372, 555, 564
BstMAI	GTCTC	2 cut(s)	569, 611
BstMBI	GATC	4 cut(s)	139, 369, 552, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 541
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	245, 571
BstV2I	GAAGAC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	217, 266
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	2 cut(s)	61, 680
CciI	TCATGA	2 cut(s)	505, 637
Cfr10I	RCCGGY	1 cut(s)	5
CviAII	CATG	8 cut(s)	118, 123, 136, 145, 251, 310, 506, 638
DdeI	CTNAG	4 cut(s)	330, 416, 498, 588
DpnI	GATC	4 cut(s)	141, 371, 554, 563
DpnII	GATC	4 cut(s)	139, 369, 552, 561
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	519, 567, 663
EarI	CTCTTC	3 cut(s)	519, 567, 663
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	3 cut(s)	122, 166, 440
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoT14I	CCWWGG	3 cut(s)	122, 166, 440
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	3 cut(s)	122, 166, 440
FaeI	CATG	8 cut(s)	121, 126, 139, 148, 254, 313, 509, 641
FatI	CATG	8 cut(s)	117, 122, 135, 144, 250, 309, 505, 637
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	234, 585, 671
FokI	GGATG	2 cut(s)	204, 273
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	234, 585, 671
GluI	GCNGC	3 cut(s)	234, 585, 671
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	6, 455, 633
Hin1II	CATG	8 cut(s)	121, 126, 139, 148, 254, 313, 509, 641
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	208, 214, 336, 387, 502
HpaII	CCGG	3 cut(s)	6, 455, 633
HphI	GGTGA	4 cut(s)	392, 404, 437, 556
Hpy166II	GTNNAC	2 cut(s)	73, 513
Hpy188I	TCNGA	3 cut(s)	213, 341, 417
Hpy188III	TCNNGA	2 cut(s)	506, 638
Hpy8I	GTNNAC	2 cut(s)	73, 513
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	3 cut(s)	347, 351, 416
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	315, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 541
HpyF3I	CTNAG	4 cut(s)	330, 416, 498, 588
Hsp92II	CATG	8 cut(s)	121, 126, 139, 148, 254, 313, 509, 641
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	139, 369, 552, 561
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	8 cut(s)	19, 50, 235, 468, 470, 544, 646, 675
Lsp1109I	GCAGC	2 cut(s)	245, 571
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	56, 380
MalI	GATC	4 cut(s)	141, 371, 554, 563
MboI	GATC	4 cut(s)	139, 369, 552, 561
MboII	GAAGA	5 cut(s)	286, 457, 536, 584, 650
MhlI	GDGCHC	2 cut(s)	108, 201
MluCI	AATT	2 cut(s)	225, 448
MlyI	GAGTC	2 cut(s)	202, 396
MroXI	GAANNNNTTC	2 cut(s)	293, 449
MseI	TTAA	2 cut(s)	240, 492
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	3 cut(s)	6, 455, 633
MspR9I	CCNGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	494, 541
NciI	CCSGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	139, 369, 552, 561
NlaIII	CATG	8 cut(s)	121, 126, 139, 148, 254, 313, 509, 641
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	56, 380
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	2 cut(s)	505, 637
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	663
PdmI	GAANNNNTTC	2 cut(s)	293, 449
PfeI	GAWTC	3 cut(s)	214, 336, 502
PflFI	GACNNNGTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	235, 586, 672
PleI	GAGTC	2 cut(s)	202, 395
PpsI	GAGTC	2 cut(s)	202, 395
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	2 cut(s)	240, 492
SatI	GCNGC	3 cut(s)	234, 585, 671
Sau3AI	GATC	4 cut(s)	139, 369, 552, 561
SchI	GAGTC	2 cut(s)	202, 396
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	108, 201
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	579
SgrDI	CGTCGACG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	491, 545
SmoI	CTYRAG	2 cut(s)	491, 545
Sse9I	AATT	2 cut(s)	225, 448
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	3 cut(s)	122, 166, 440
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	6 cut(s)	24, 30, 45, 72, 180, 347
TasI	AATT	2 cut(s)	225, 448
TfiI	GAWTC	3 cut(s)	214, 336, 502
Tru1I	TTAA	2 cut(s)	240, 492
Tru9I	TTAA	2 cut(s)	240, 492
TscAI	CASTG	2 cut(s)	61, 680
TseFI	GTSAC	2 cut(s)	56, 380
TseI	GCWGC	3 cut(s)	233, 584, 670
Tsp45I	GTSAC	2 cut(s)	56, 380
TspDTI	ATGAA	4 cut(s)	164, 206, 494, 583
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	61, 680
Tth111I	GACNNNGTC	1 cut(s)	386
Van91I	CCANNNNNTGG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	2 cut(s)	293, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.