Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Reverse (-)

3665694 .. 3667650

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G051900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATTATCGAGTGTGATAGTGATAATTGGGTGGTCGATGAGTTGGGTGCAACTGATTTGTTCAATCAACTTCTGCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACCATTGAAGACATTGTAGAGGTTCTGAAACGAACTCCAATTCATCCTAGAGTCGTCCCAGCAATTAAAGCAGCCCATGCTTTAGGGTGTGATTTGAAGATTGTTAGCGATGCAAATCTGTTTTTTATTGAGACAATCTTGAAGCATCTTGGGCTGGAGGAGTATTTCTCAGAGATCAACACCAACCCTAGCTATGTGGATGAACAAGGAAGGGTTAGGATTTCTCCTCACCATGATTTCATCAAATGCTCTCATGGCTGCAGTCTCTGCCCTCCCAACATGTGCAAGGGTGTGGTCATTGAAAGAGTCCAGACTTCTCTCTCCAGTGAAGGGAAGAAGAAGATAATCTATCTTGGAGATGGCAGTGGTGATTATTGCCCAAGCTTGAAGCTCAAGGAAGTAGATTTTGTAATGCCAAGGAAGAACTTCCCACTGTTTGACCTAATCTGCAAGGACCCATTGCTCATCAAAGCTGACATCCATGAATGGACTGATGGGGAGGAGCTTGAGCATATTCTGCTCAACCTCATCAACACAATTGCCACGGAAGAAAATGCTCAGTTTATCTCAGCAGCTGATTGCAATTTGCAGACCATGTCTGCTCATGAGGCCTTGCCTCAGGCTCTCCCTGTCCGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

272

Amino Acids

30.44

Weight (kDa)

5.04

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	123, 504
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	100, 182, 271, 316, 476, 562
AluBI	AGCT	7 cut(s)	157, 366, 558, 565, 647, 679, 749
AluI	AGCT	7 cut(s)	157, 366, 558, 565, 647, 679, 749
Alw26I	GTCTC	2 cut(s)	299, 443
AlwNI	CAGNNNCTG	2 cut(s)	441, 749
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	3 cut(s)	245, 432, 746
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	395, 554
AvaII	GGWCC	1 cut(s)	628
AxyI	CCTNAGG	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	257, 419, 758
BccI	CCATC	2 cut(s)	527, 662
BcoDI	GTCTC	2 cut(s)	299, 443
BfaI	CTAG	2 cut(s)	222, 363
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	3 cut(s)	246, 433, 747
BlsI	GCNGC	3 cut(s)	247, 434, 748
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	1 cut(s)	630
BmsI	GCATC	2 cut(s)	274, 328
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	2 cut(s)	350, 481
BpuEI	CTTGAG	2 cut(s)	551, 701
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	122, 590, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 504
Bse1I	ACTGG	1 cut(s)	498
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	122, 590, 717
BseGI	GGATG	4 cut(s)	150, 217, 379, 651
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	123, 504
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	4 cut(s)	357, 746, 756, 806
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	3 cut(s)	347, 390, 689
BseXI	GCAGC	3 cut(s)	257, 419, 758
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	123, 504
BsmAI	GTCTC	2 cut(s)	299, 443
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	785
Bsp143I	GATC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	4 cut(s)	356, 745, 755, 805
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	122, 590, 717
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	122, 590
Bst4CI	ACNGT	1 cut(s)	609
BstAPI	GCANNNNNTGC	3 cut(s)	251, 441, 691
BstDEI	CTNAG	4 cut(s)	343, 732, 742, 792
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	4 cut(s)	150, 217, 379, 651
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	2 cut(s)	299, 443
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 242, 251, 325, 429, 441, 691, 782
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	257, 419, 758
BstV2I	GAAGAC	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	1 cut(s)	785
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	150, 217, 379, 651
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	505, 544, 605
CaiI	CAGNNNCTG	2 cut(s)	441, 749
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	628
CviAII	CATG	9 cut(s)	118, 136, 251, 407, 428, 454, 656, 769, 779
DdeI	CTNAG	4 cut(s)	343, 732, 742, 792
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	122, 590
Eco147I	AGGCCT	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	628
Eco81I	CCTNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	122, 590
ErhI	CCWWGG	2 cut(s)	122, 590
FaeI	CATG	9 cut(s)	121, 139, 254, 410, 431, 457, 659, 772, 782
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	9 cut(s)	117, 135, 250, 406, 427, 453, 655, 768, 778
Fnu4HI	GCNGC	3 cut(s)	246, 433, 747
FokI	GGATG	4 cut(s)	157, 204, 386, 638
Fsp4HI	GCNGC	3 cut(s)	246, 433, 747
FspBI	CTAG	2 cut(s)	222, 363
GluI	GCNGC	3 cut(s)	246, 433, 747
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	2 cut(s)	350, 481
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	9 cut(s)	121, 139, 254, 410, 431, 457, 659, 772, 782
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	2 cut(s)	225, 480
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	395, 554
Hpy188I	TCNGA	2 cut(s)	201, 346
Hpy188III	TCNNGA	3 cut(s)	313, 484, 779
HpyAV	CCTTC	3 cut(s)	145, 378, 497
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	7 cut(s)	86, 287, 435, 459, 624, 756, 763
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 242, 251, 325, 429, 441, 691, 782
HpyF3I	CTNAG	4 cut(s)	343, 732, 742, 792
Hsp92II	CATG	9 cut(s)	121, 139, 254, 410, 431, 457, 659, 772, 782
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	154, 676
LpnPI	CCDG	5 cut(s)	246, 314, 497, 511, 779
Lsp1109I	GCAGC	3 cut(s)	257, 419, 758
LweI	GCATC	2 cut(s)	274, 328
MaeI	CTAG	2 cut(s)	222, 363
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	7 cut(s)	194, 283, 520, 523, 526, 607, 734
MfeI	CAATTG	1 cut(s)	711
MluCI	AATT	6 cut(s)	9, 61, 213, 237, 711, 757
MlyI	GAGTC	2 cut(s)	234, 489
MnlI	CCTC	8 cut(s)	187, 325, 411, 456, 667, 710, 775, 801
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	1 cut(s)	808
MunI	CAATTG	1 cut(s)	711
MwoI	GCNNNNNNNGC	8 cut(s)	118, 242, 251, 325, 429, 441, 691, 782
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	9 cut(s)	121, 139, 254, 410, 431, 457, 659, 772, 782
NlaIV	GGNNCC	1 cut(s)	630
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	785
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	247, 434, 748
PleI	GAGTC	2 cut(s)	233, 488
PpsI	GAGTC	2 cut(s)	233, 488
PpuMI	RGGWCCY	1 cut(s)	628
PscI	ACATGT	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	628
PspPPI	RGGWCCY	1 cut(s)	628
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	441, 749
PsyI	GACNNNGTC	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	246, 433, 747
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	2 cut(s)	234, 489
SfaNI	GCATC	2 cut(s)	274, 328
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	628
SmlI	CTYRAG	2 cut(s)	566, 680
SmoI	CTYRAG	2 cut(s)	566, 680
Sse9I	AATT	6 cut(s)	9, 61, 213, 237, 711, 757
SseBI	AGGCCT	1 cut(s)	785
SspMI	CTAG	2 cut(s)	222, 363
StuI	AGGCCT	1 cut(s)	785
StyI	CCWWGG	2 cut(s)	122, 590
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	45, 72
TasI	AATT	6 cut(s)	9, 61, 213, 237, 711, 757
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	3 cut(s)	505, 544, 612
TseI	GCWGC	3 cut(s)	245, 432, 746
TspDTI	ATGAA	6 cut(s)	149, 164, 206, 390, 403, 672
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	3 cut(s)	505, 544, 612
Tth111I	GACNNNGTC	1 cut(s)	769
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	628
XceI	RCATGY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	2 cut(s)	222, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.