Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Forward (+)

61740410 .. 61743123

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCATGTGAGACTGAATTTTTGTTTTTTGGACAAAATTTTTCAGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACGATTGACGACATTGTGGAGGTGCTCAAAAGGACTCCAATTCATCCCAGAATTGTGCCAGCCATTAAAGCAGCCCATGCTTTAGGATGTGACTTGAGGATTGTGAGTGATGCGAATCTGTTTTTCATTGAAACGATTTTGAAGCATCTTGGTCTGGAGGAATATTTCTCAGAAATCAACACCAACCCAGGTTATGTTGATGAAGAAGGAAGGGTTAGGATTTCACCTTTCTGTGATTTCACCAATTCACCTCATGGCTGCAGCCTCTGCCCTCCTAACATGTGCAAGAGTGTGATAATTGAGAGAATCCAAGCTTCGACTGAAGGGAGGAAAAGGATGATCTACTTGGGTGATGGAGTTGGTGATTACTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTCGTAATGCCAAGGAAGAATTTCCCACTTTTTGATAAGATTTGCCAGAATCCTCTGGCTCTGAAGGCCGAGATTCATGAGTGGACTGATGGAGAAGAGCTTGAGCACATTTTGCTCAACCTGATCAACACAATCGTCGTGGAAGAGAGTGCTGCTGCTCAGTTCATTACGACTGACTGCAAGTTACAGACCATCTCTGTTTCTGGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

241

Amino Acids

27.25

Weight (kDa)

5.72

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	14 - 202	1.6e-73	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	16, 36, 499
AcuI	CTGAAG	2 cut(s)	423, 563
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	212, 223, 463
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	6 cut(s)	64, 395, 459, 466, 580, 707
AluI	AGCT	6 cut(s)	64, 395, 459, 466, 580, 707
Alw21I	GWGCWC	2 cut(s)	108, 588
Alw26I	GTCTC	1 cut(s)	4
AlwNI	CAGNNNCTG	1 cut(s)	348
AoxI	GGCC	2 cut(s)	546, 693
ApeKI	GCWGC	5 cut(s)	152, 339, 342, 632, 635
ApoI	RAATTY	3 cut(s)	16, 36, 499
ArsI	GACNNNNNNTTYG	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	500
AsuHPI	GGTGA	5 cut(s)	297, 313, 321, 443, 455
Bbv12I	GWGCWC	2 cut(s)	108, 588
BbvI	GCAGC	5 cut(s)	164, 326, 354, 619, 622
BccI	CCATC	3 cut(s)	428, 563, 680
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	5 cut(s)	153, 340, 343, 633, 636
BlsI	GCNGC	5 cut(s)	154, 341, 344, 634, 637
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	2 cut(s)	181, 235
BmuI	ACTGGG	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	196, 452, 602
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	268, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bse1I	ACTGG	1 cut(s)	713
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	268, 491
BseGI	GGATG	4 cut(s)	57, 124, 173, 423
BseJI	GATNNNNATC	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	264, 653
BseNI	ACTGG	1 cut(s)	713
BseXI	GCAGC	5 cut(s)	164, 326, 354, 619, 622
BshFI	GGCC	2 cut(s)	548, 695
BsiHKAI	GWGCWC	2 cut(s)	108, 588
BsmAI	GTCTC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	548, 695
Bsp1286I	GDGCHC	2 cut(s)	108, 588
Bsp143I	GATC	2 cut(s)	420, 603
BspANI	GGCC	2 cut(s)	548, 695
BspCNI	CTCAG	2 cut(s)	263, 652
BspHI	TCATGA	2 cut(s)	556, 688
BspMAI	CTGCAG	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	268, 491
BssMI	GATC	2 cut(s)	420, 603
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	570, 618
BstAPI	GCANNNNNTGC	3 cut(s)	158, 348, 592
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	250, 639
BstF5I	GGATG	4 cut(s)	57, 124, 173, 423
BstKTI	GATC	2 cut(s)	423, 606
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	420, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 348, 545, 592
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	2 cut(s)	8, 364
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	5 cut(s)	164, 326, 354, 619, 622
BsuRI	GGCC	2 cut(s)	548, 695
BtsCI	GGATG	4 cut(s)	57, 124, 173, 423
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	348
CciI	TCATGA	2 cut(s)	556, 688
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	6 cut(s)	5, 158, 335, 361, 557, 689
DdeI	CTNAG	2 cut(s)	250, 639
DpnI	GATC	2 cut(s)	422, 605
DpnII	GATC	2 cut(s)	420, 603
Eam1104I	CTCTTC	2 cut(s)	570, 618
EarI	CTCTTC	2 cut(s)	570, 618
Eco130I	CCWWGG	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	423, 563
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	6 cut(s)	8, 161, 338, 364, 560, 692
FaiI	YATR	7 cut(s)	6, 159, 276, 336, 362, 558, 690
FatI	CATG	6 cut(s)	4, 157, 334, 360, 556, 688
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	5 cut(s)	153, 340, 343, 633, 636
FokI	GGATG	4 cut(s)	64, 111, 180, 430
Fsp4HI	GCNGC	5 cut(s)	153, 340, 343, 633, 636
GluI	GCNGC	5 cut(s)	153, 340, 343, 633, 636
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	548, 695
Hin1II	CATG	6 cut(s)	8, 161, 338, 364, 560, 692
HindIII	AAGCTT	2 cut(s)	393, 457
HinfI	GANTC	5 cut(s)	115, 196, 387, 529, 553
HphI	GGTGA	5 cut(s)	297, 313, 321, 443, 455
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	2 cut(s)	253, 543
Hpy188III	TCNNGA	4 cut(s)	44, 236, 557, 689
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	7 cut(s)	52, 281, 285, 398, 467, 538, 706
HpyCH4V	TGCA	4 cut(s)	4, 342, 366, 660
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 348, 545, 592
HpyF3I	CTNAG	2 cut(s)	250, 639
Hsp92II	CATG	6 cut(s)	8, 161, 338, 364, 560, 692
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	420, 603
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	5 cut(s)	164, 326, 354, 619, 622
LweI	GCATC	2 cut(s)	181, 235
MaeIII	GTNAC	2 cut(s)	170, 663
MalI	GATC	2 cut(s)	422, 605
MboI	GATC	2 cut(s)	420, 603
MboII	GAAGA	4 cut(s)	296, 508, 587, 635
MhlI	GDGCHC	2 cut(s)	108, 588
MluCI	AATT	7 cut(s)	16, 36, 120, 132, 325, 378, 499
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	9 cut(s)	94, 171, 232, 342, 356, 363, 402, 543, 685
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 348, 545, 592
NdeII	GATC	2 cut(s)	420, 603
NlaIII	CATG	6 cut(s)	8, 161, 338, 364, 560, 692
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 364
PagI	TCATGA	2 cut(s)	556, 688
PceI	AGGCCT	1 cut(s)	695
PciI	ACATGT	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	4 cut(s)	196, 387, 529, 553
PkrI	GCNGC	5 cut(s)	154, 341, 344, 634, 637
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	5 cut(s)	153, 340, 343, 633, 636
Sau3AI	GATC	2 cut(s)	420, 603
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	108, 588
SfaNI	GCATC	2 cut(s)	181, 235
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	3 cut(s)	175, 467, 581
SmoI	CTYRAG	3 cut(s)	175, 467, 581
Sse9I	AATT	7 cut(s)	16, 36, 120, 132, 325, 378, 499
SseBI	AGGCCT	1 cut(s)	695
SspI	AATATT	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	491
TaqI	TCGA	1 cut(s)	398
TasI	AATT	7 cut(s)	16, 36, 120, 132, 325, 378, 499
TfiI	GAWTC	4 cut(s)	196, 387, 529, 553
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	5 cut(s)	152, 339, 342, 632, 635
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	7 cut(s)	56, 71, 113, 196, 297, 545, 634
XapI	RAATTY	3 cut(s)	16, 36, 499
XceI	RCATGY	2 cut(s)	8, 364
XmnI	GAANNNNTTC	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.