Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00046

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Forward (+)

25524 .. 26822

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGACGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATCATCGACTGCGACAGCGACAACTGGGTCGTCGATGGGTTGGGTGCCACTGACTTGTTCAATCAGCTCCTCCCCACCATGCCTTGGAACTCTCTCATGGAAAAAACGATTGAGGACATTGTGGAGGTGCTCAAAAGGACTCCAATTCATCCCAGAATTGTGCCAGCCATTAAAGCAGCCCATGCTTTAGGATGTGACTTGAGGATTGTGAGTGATGCGAATCTGTTTTTCATTGAAACGATTTTGAAGCATCTTGGTCTGGAGGAATATTTCTCAGAAATCAACACTAACCCAGGTTATGTTGATGAAGACGGAAGGGTTAGGATTTCACCTTTCTGTGATTTCACCAATTCACCTCATGGCTGCAGCATCTGCCCCCCTAACATGTGCAAGAGTGTGATAATTGAGAGAATCCAAGCTTCGACTGAAGGGAGGAAAAGGATGATCTACTTGGGTGATGGAGTTGGTGATTACTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTCGTAATGCCAAGGAAGAATTTCCCACTTTTTGATAAGATTTGCCAGAATCCTCTGGCTCTGAAGGCCGAGATTCATGAGTGGACTGATGGAGAAGAGCTTGAGCACATTTTGCTCAACCTGATCAACACAATCGTGTTGGAAGAGAGTGCTGCTGCTCAGTTCATTACGACTGACTGCAAGTTACAGACCATCTCTGTTTCTGGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

262

Amino Acids

29.33

Weight (kDa)

4.77

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 223	2.9e-83	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	2 cut(s)	486, 626
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	100, 275, 286, 526
AjnI	CCWGG	1 cut(s)	331
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	6 cut(s)	106, 458, 522, 529, 643, 770
AluI	AGCT	6 cut(s)	106, 458, 522, 529, 643, 770
Alw21I	GWGCWC	2 cut(s)	171, 651
AlwNI	CAGNNNCTG	1 cut(s)	411
AoxI	GGCC	2 cut(s)	609, 756
ApeKI	GCWGC	5 cut(s)	215, 402, 405, 695, 698
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	563
AsuHPI	GGTGA	5 cut(s)	360, 376, 384, 506, 518
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	171, 651
BbvI	GCAGC	5 cut(s)	227, 389, 417, 682, 685
BccI	CCATC	5 cut(s)	47, 68, 491, 626, 743
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	5 cut(s)	216, 403, 406, 696, 699
BlsI	GCNGC	5 cut(s)	217, 404, 407, 697, 700
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	2 cut(s)	73, 770
BmsI	GCATC	3 cut(s)	244, 298, 417
BmuI	ACTGGG	2 cut(s)	73, 770
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	3 cut(s)	259, 515, 665
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	122, 331, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	68, 776
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	122, 331, 554
BseGI	GGATG	3 cut(s)	187, 236, 486
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	327, 716
BseNI	ACTGG	2 cut(s)	68, 776
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	227, 389, 417, 682, 685
BshFI	GGCC	2 cut(s)	611, 758
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	171, 651
BslI	CCNNNNNNNGG	1 cut(s)	123
BsnI	GGCC	2 cut(s)	611, 758
Bsp1286I	GDGCHC	2 cut(s)	171, 651
Bsp143I	GATC	2 cut(s)	483, 666
BspANI	GGCC	2 cut(s)	611, 758
BspCNI	CTCAG	2 cut(s)	326, 715
BspHI	TCATGA	2 cut(s)	619, 751
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	68, 776
BssECI	CCNNGG	3 cut(s)	122, 331, 554
BssMI	GATC	2 cut(s)	483, 666
BssT1I	CCWWGG	2 cut(s)	122, 554
Bst2UI	CCWGG	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	633, 681
BstAPI	GCANNNNNTGC	3 cut(s)	221, 411, 655
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	313, 702
BstF5I	GGATG	3 cut(s)	187, 236, 486
BstKTI	GATC	2 cut(s)	486, 669
BstMBI	GATC	2 cut(s)	483, 666
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 221, 411, 608, 655
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	5 cut(s)	227, 389, 417, 682, 685
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	611, 758
BtsCI	GGATG	3 cut(s)	187, 236, 486
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	411
CciI	TCATGA	2 cut(s)	619, 751
CviAII	CATG	7 cut(s)	118, 136, 221, 398, 424, 620, 752
DdeI	CTNAG	2 cut(s)	313, 702
DpnI	GATC	2 cut(s)	485, 668
DpnII	GATC	2 cut(s)	483, 666
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	633, 681
EarI	CTCTTC	2 cut(s)	633, 681
Eco130I	CCWWGG	2 cut(s)	122, 554
Eco147I	AGGCCT	1 cut(s)	758
Eco57I	CTGAAG	2 cut(s)	486, 626
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	122, 554
ErhI	CCWWGG	2 cut(s)	122, 554
FaeI	CATG	7 cut(s)	121, 139, 224, 401, 427, 623, 755
FaiI	YATR	8 cut(s)	119, 137, 222, 339, 399, 425, 621, 753
FatI	CATG	7 cut(s)	117, 135, 220, 397, 423, 619, 751
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	5 cut(s)	216, 403, 406, 696, 699
FokI	GGATG	3 cut(s)	174, 243, 493
Fsp4HI	GCNGC	5 cut(s)	216, 403, 406, 696, 699
GluI	GCNGC	5 cut(s)	216, 403, 406, 696, 699
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	611, 758
Hin1II	CATG	7 cut(s)	121, 139, 224, 401, 427, 623, 755
HindIII	AAGCTT	2 cut(s)	456, 520
HinfI	GANTC	5 cut(s)	178, 259, 450, 592, 616
HphI	GGTGA	5 cut(s)	360, 376, 384, 506, 518
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	2 cut(s)	316, 606
Hpy188III	TCNNGA	3 cut(s)	299, 620, 752
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	348, 461, 530, 601, 769
HpyCH4V	TGCA	3 cut(s)	405, 429, 723
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 221, 411, 608, 655
HpyF3I	CTNAG	2 cut(s)	313, 702
Hsp92II	CATG	7 cut(s)	121, 139, 224, 401, 427, 623, 755
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	2 cut(s)	483, 666
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	5 cut(s)	227, 389, 417, 682, 685
LweI	GCATC	3 cut(s)	244, 298, 417
MaeIII	GTNAC	2 cut(s)	233, 726
MalI	GATC	2 cut(s)	485, 668
MboI	GATC	2 cut(s)	483, 666
MboII	GAAGA	4 cut(s)	359, 571, 650, 698
MhlI	GDGCHC	2 cut(s)	171, 651
MluCI	AATT	6 cut(s)	9, 183, 195, 388, 441, 562
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	9 cut(s)	119, 145, 157, 234, 295, 405, 465, 606, 748
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	212, 221, 411, 608, 655
NdeII	GATC	2 cut(s)	483, 666
NlaIII	CATG	7 cut(s)	121, 139, 224, 401, 427, 623, 755
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	677
PagI	TCATGA	2 cut(s)	619, 751
PceI	AGGCCT	1 cut(s)	758
PciI	ACATGT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	4 cut(s)	259, 450, 592, 616
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	5 cut(s)	217, 404, 407, 697, 700
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	407
PstNI	CAGNNNCTG	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	216, 403, 406, 696, 699
Sau3AI	GATC	2 cut(s)	483, 666
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	171, 651
SfaNI	GCATC	3 cut(s)	244, 298, 417
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	3 cut(s)	238, 530, 644
SmoI	CTYRAG	3 cut(s)	238, 530, 644
Sse9I	AATT	6 cut(s)	9, 183, 195, 388, 441, 562
SseBI	AGGCCT	1 cut(s)	758
SspI	AATATT	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	758
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	2 cut(s)	122, 554
TaqI	TCGA	3 cut(s)	45, 72, 461
TasI	AATT	6 cut(s)	9, 183, 195, 388, 441, 562
TfiI	GAWTC	4 cut(s)	259, 450, 592, 616
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	5 cut(s)	215, 402, 405, 695, 698
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	176, 259, 360, 608, 697
TspGWI	ACGGA	2 cut(s)	21, 366
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.