Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Forward (+)

47705239 .. 47712384

Gene Structure 7146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGGCTGAAGCACTCATTTCCGTTCTCCTAGAACAATTGGCTTCCATCATCCATCAAGAGGTACAACAGCAAGTGAAATTGGTAGTTGATGTTAAGAAAGAAGTTGCAAAGCTCACCCACAATTTCCGAGCTATAGAAGCCGTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGCTTCCGTTAAATTATGGCTGGATGACTTAAAGGACGTGTCCAACGAGATGGAGGACGTGCTGGATGATTGGAACAGTGAAATTCTGAGGCTACAAATTGAGAAACAAGAGAGAGAAGCTGGAAATGCTCTTGATACGACTAAGAAGAAGGTATGTCTATGCATTCCTACTGCTTTCTTTAAATCTGGCCAAGTTAGTCGAGTTATTTTTCGTCGCGACATTGCTCAAAAGATTAAAGATCTCAATGAAAGGTTAGCAACAATTGCTAATATGAGGCAAAATTTTAACTTTCAGTCTACAAAAAGTGGTACTGAACTTATTGAGCGACAAAAGACTACTTCTTTTGTCGATCAAACATTTGGTCGGGTAGATGAAAAAGAATTATTGGTGGGTAAGTTGTTGAGTGAGAGTAATCCTGAAGGGCAGAGCCCCATTGTCATCCCTATTGTAGGGATGGGTGGGATCGGTAAAACAACCCTTTCCCAACTAGCATATAATGACGAAAAAGTGAAGGCCAATTTCACAAAAAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGTTCAACATAGCCAAAGCCATCATAGTTGCCCTTGATGGAAAAGTCAATCCCATTTCGAATGACCTAGAAGCTTTCTTCCGATGTGTGCACGAGTCTATTGAGAGGAAAAAGTTTCTCCTCGTCTTAGATGATGTGTGGAACCAAGACTATAGGAAGTGGGAAAAATTGAAGCTACCTTTACAGAATGGTGCTGTAGGTAGTAAAATTATAGTCACTACACGAAAAGAAGAAGTAGCTAGGATGATGGGATCAGCACCCGATAATACTATCAATTTGAAGGTGTTGAGTGACGAAAATTGTTGGTCATTGTTCGCTGGAATTGCCTTTACCAATAGAAACCAAGATTGTCAAATTTTAGAACCTATTGGTAGGGAGATTGTAAAGAAGTGCAAAGGGTTGCCTCTTGTTGCTAAGACTTTAGGTGGTCTCATGCGCGGTAAGAAAACAAAGAAAGAATGGCAAGATGTTTTGAGTAGTAAGATATGGGAGCTAGACATAGTGGAGAAACAAGTTTTCCAACCGCTATTACTAAGTTATTATGATTTAACTCCAATGATCAAGCGTTGTCTCTTATATTGTGTTACTTTCCCAAAAGACCATGTAATTGACAAAGAAGTTTTGATTGAGTTGTGGATGTCGCAAGGTTTTCTTGGTTCAGTTGGAAACAAAGAAAAGACAATGATAGACATTGGAGAATCATATTTCGATAACTTGGTAATGCGATCTTTCTTCCAAAATTTCAAGAAAGATGAATTTGGAGATATTGAAAGGTGCCAAATGCATGATATTGTGCACGACTTTCTCCAATATTTAACCAAGAATGAATGCTTAATCGTTGAGGTCAAAGTTGGTGAGGAGAAAATAGAATTACCAGCAGACAATAAGTTTGGTCATTTAACCATAACATCTGCACCCAAAAGACCTTTTCCCCTTTCTATTGACCATTGTCAACGTCTGCGGACCATCACAACATTTAATTGTAAAATTACAAGTCTCAGCCGAGAGTTGATTTTACAATTAAAATGCGTGAGGACGTTGAATTTGAGTGACAACCTTATCGAAGAAGTTCCGGACGAGGTGGGCGGGTTGGTGCACTTGAGGTATTTGGATTTATCCGAAAATCGGAGGCTGAAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGATGAGTGCGAGGAGTTAGAAAAGTTACCCGAGGCCATGGGAAAGTTGACCAGCTTGCAGCATCTTCATGCTCAGAGGTATATGGGGGTTCTGAAGTTGCCCAAATCAATTGCGAGGTTGAAAAGTCTACGGACGCTAGATCTGCGTGTTGTAATTGAAGGTGAAGGTGAAGGTAGTGGAGATGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGACGCTTAGGATTGAATTGGTGGGCAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCATTTGATACTATGGTTCTTCTGCGAGAGCGAGGGCAACCAGAGTACCATCTGGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTCAATCCTTAGAGATCTCATGTTACAGTGGCAGCACCCTGTGCCCCAATTGGACCTCCTCTTTAATTAACTTGAAAAGCCTAACCTTCTTGGGGTGCGGCGTTTGTAAGTATGTGCCTCTTTCGGTTTTGGGCGACTTGGGGTCCCTTGAGACACTCAGATTTCAAGGAATGCCACAAGTGAAAAAGGTTGGATTTGAGTACTCACTTGATCATCAGTTCCCCAATCTGAAACAACTCGAGTTCTGGCAAATGCGGGAGTGGGAAGAATGGGATCATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCTCTTACTGCCATAAGCTGAAGACACTGCCAGACTTCCTTCGGAGGAAGACGCCGCTGCTTCAGAATTTGATCATCTTGGATTGTTCCATTCTCTCCCAAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTCCAAGATTTCTCACATCCCAAACATCGAAATTGATTTTAAAACTGTACAAAAAGATGGAGTTTGGATCGAACAAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

966

Amino Acids

110.31

Weight (kDa)

5.97

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 95	7.6e-21	Rx N-terminal domain
NB-ARC	PF00931	185 - 359	1e-37	NB-ARC domain
WHD_DRP	PF23559	443 - 514	2e-25	Disease resistance protein Winged helix domain
LRR_14	PF23598	566 - 903	2.5e-30	Leucine-rich repeat region
LRR_8	PF13855	566 - 622	2.2e-07	Leucine rich repeat
LRR_8	PF13855	591 - 643	6.6e-08	Leucine rich repeat
LRR_R13L1-DRL21	PF25019	709 - 838	1.3e-25	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1512
AccI	GTMKAC	2 cut(s)	473, 2053
AccII	CGCG	2 cut(s)	393, 1176
AccIII	TCCGGA	1 cut(s)	1810
AciI	CCGC	8 cut(s)	1176, 1262, 1699, 1824, 2213, 2439, 2596, 2741
AclWI	GGATC	4 cut(s)	647, 997, 2622, 2891
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	8 cut(s)	258, 457, 1092, 1477, 1493, 1780, 2332, 2752
AcuI	CTGAAG	7 cut(s)	27, 615, 1892, 2039, 2138, 2726, 2732
AcyI	GRCGYC	1 cut(s)	2738
AdeI	CACNNNGTG	1 cut(s)	2382
AfaI	GTAC	5 cut(s)	63, 487, 2296, 2543, 2865
AfiI	CCNNNNNNNGG	4 cut(s)	58, 626, 1863, 2433
AflIII	ACRYGT	1 cut(s)	213
AhdI	GACNNNNNGTC	1 cut(s)	2482
AjiI	CACGTC	2 cut(s)	214, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	2210, 2242
Alw21I	GWGCWC	4 cut(s)	147, 831, 1536, 1836
Alw26I	GTCTC	6 cut(s)	727, 1172, 1313, 1739, 2133, 2486
Alw44I	GTGCAC	3 cut(s)	827, 1532, 1832
AlwI	GGATC	4 cut(s)	647, 997, 2622, 2891
Ama87I	CYCGRG	2 cut(s)	1955, 2579
Aor13HI	TCCGGA	1 cut(s)	1810
AoxI	GGCC	4 cut(s)	364, 690, 1959, 2806
ApaLI	GTGCAC	3 cut(s)	827, 1532, 1832
ApeKI	GCWGC	4 cut(s)	1984, 2201, 2373, 2743
ApoI	RAATTY	8 cut(s)	258, 457, 1092, 1477, 1493, 1780, 2332, 2752
ArsI	GACNNNNNNTTYG	6 cut(s)	523, 555, 1610, 1642, 1765, 1797
Asp700I	GAANNNNTTC	1 cut(s)	1806
AspLEI	GCGC	1 cut(s)	1176
AspS9I	GGNCC	5 cut(s)	1701, 2394, 2484, 2807, 2817
AsuC2I	CCSGG	1 cut(s)	2810
AsuHPI	GGTGA	6 cut(s)	106, 1604, 2099, 2105, 2242, 2640
AsuII	TTCGAA	1 cut(s)	797
AvaI	CYCGRG	2 cut(s)	1955, 2579
AvaII	GGWCC	4 cut(s)	1701, 2394, 2484, 2817
BaeGI	GKGCMC	4 cut(s)	831, 1536, 1836, 2387
BaeI	ACNNNNGTAYC	4 cut(s)	2249, 2278, 2282, 2311
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	1512
BanII	GRGCYC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	2714, 2741
Bbv12I	GWGCWC	4 cut(s)	147, 831, 1536, 1836
BbvI	GCAGC	4 cut(s)	1996, 2188, 2385, 2730
BceAI	ACGGC	1 cut(s)	125
BclI	TGATCA	3 cut(s)	1296, 2551, 2757
BcnI	CCSGG	1 cut(s)	2810
BcoDI	GTCTC	6 cut(s)	727, 1172, 1313, 1739, 2133, 2486
BfaI	CTAG	6 cut(s)	29, 665, 806, 978, 1232, 2063
BfmI	CTRYAG	3 cut(s)	132, 889, 933
BglII	AGATCT	3 cut(s)	415, 2065, 2355
BisI	GCNGC	6 cut(s)	1985, 2202, 2374, 2440, 2741, 2744
BlsI	GCNGC	6 cut(s)	1986, 2203, 2375, 2441, 2742, 2745
BmcAI	AGTACT	1 cut(s)	2543
Bme1390I	CCNGG	1 cut(s)	2810
Bme18I	GGWCC	4 cut(s)	1701, 2394, 2484, 2817
BmeRI	GACNNNNNGTC	1 cut(s)	2482
BmeT110I	CYCGRG	2 cut(s)	1955, 2579
BmgBI	CACGTC	2 cut(s)	214, 235
BmgT120I	GGNCC	5 cut(s)	1701, 2394, 2484, 2807, 2817
BmiI	GGNNCC	4 cut(s)	881, 1514, 2485, 2486
BmrFI	CCNGG	1 cut(s)	2810
BmsI	GCATC	4 cut(s)	142, 1996, 2200, 2623
BoxI	GACNNNNGTC	1 cut(s)	1686
BpiI	GAAGAC	2 cut(s)	2714, 2741
Bpu10I	CCTNAGC	1 cut(s)	2165
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	1858, 2510
BpuMI	CCSGG	1 cut(s)	2810
BsaHI	GRCGYC	1 cut(s)	2738
BsaI	GGTCTC	1 cut(s)	1172
BsaJI	CCNNGG	2 cut(s)	1956, 1962
BsaWI	WCCGGW	1 cut(s)	1810
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 626, 1863, 2433
Bse3DI	GCAATG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	1810
BseDI	CCNNGG	2 cut(s)	1956, 1962
BseGI	GGATG	8 cut(s)	48, 205, 247, 615, 636, 987, 1380, 2832
BseLI	CCNNNNNNNGG	4 cut(s)	58, 626, 1863, 2433
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	5 cut(s)	254, 738, 1750, 2012, 2512
BseRI	GAGGAG	5 cut(s)	173, 848, 1610, 1952, 2389
BseSI	GKGCMC	4 cut(s)	831, 1536, 1836, 2387
BseXI	GCAGC	4 cut(s)	1996, 2188, 2385, 2730
BsgI	GTGCAG	1 cut(s)	1635
Bsh1236I	CGCG	2 cut(s)	393, 1176
BshFI	GGCC	4 cut(s)	366, 692, 1961, 2808
BshNI	GGYRCC	1 cut(s)	1512
BsiHKAI	GWGCWC	4 cut(s)	147, 831, 1536, 1836
BsiHKCI	CYCGRG	2 cut(s)	1955, 2579
BsiSI	CCGG	2 cut(s)	1811, 2810
BslFI	GGGAC	2 cut(s)	2173, 2470
BslI	CCNNNNNNNGG	4 cut(s)	58, 626, 1863, 2433
BsmAI	GTCTC	6 cut(s)	727, 1172, 1313, 1739, 2133, 2486
BsmFI	GGGAC	2 cut(s)	2173, 2470
BsmI	GAATGC	4 cut(s)	339, 1571, 2323, 2517
BsnI	GGCC	4 cut(s)	366, 692, 1961, 2808
Bso31I	GGTCTC	1 cut(s)	1172
BsoBI	CYCGRG	2 cut(s)	1955, 2579
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	6 cut(s)	147, 608, 831, 1536, 1836, 2387
Bsp13I	TCCGGA	1 cut(s)	1810
Bsp1407I	TGTACA	1 cut(s)	2863
Bsp19I	CCATGG	1 cut(s)	1962
Bsp68I	TCGCGA	1 cut(s)	393
BspACI	CCGC	8 cut(s)	1176, 1262, 1699, 1824, 2213, 2439, 2596, 2741
BspANI	GGCC	4 cut(s)	366, 692, 1961, 2808
BspCNI	CTCAG	5 cut(s)	255, 737, 1749, 2011, 2511
BspEI	TCCGGA	1 cut(s)	1810
BspFNI	CGCG	2 cut(s)	393, 1176
BspHI	TCATGA	1 cut(s)	2620
BspLI	GGNNCC	4 cut(s)	881, 1514, 2485, 2486
BspPI	GGATC	4 cut(s)	647, 997, 2622, 2891
BspT104I	TTCGAA	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	1512
BspTNI	GGTCTC	1 cut(s)	1172
BsrDI	GCAATG	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	2863
BssECI	CCNNGG	2 cut(s)	1956, 1962
BssNI	GRCGYC	1 cut(s)	2738
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	1 cut(s)	1962
Bst2BI	CACGAG	1 cut(s)	830
Bst4CI	ACNGT	3 cut(s)	254, 2369, 2863
BstACI	GRCGYC	1 cut(s)	2738
BstAPI	GCANNNNNTGC	3 cut(s)	440, 1918, 2382
BstAUI	TGTACA	1 cut(s)	2863
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	1982
BstDSI	CCRYGG	1 cut(s)	1962
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	8 cut(s)	48, 205, 247, 615, 636, 987, 1380, 2832
BstFNI	CGCG	2 cut(s)	393, 1176
BstHHI	GCGC	1 cut(s)	1176
BstMAI	GTCTC	6 cut(s)	727, 1172, 1313, 1739, 2133, 2486
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 302, 440, 1061, 1918, 2068, 2210, 2219, 2382
BstPAI	GACNNNNGTC	1 cut(s)	1686
BstSCI	CCNGG	1 cut(s)	2808
BstSFI	CTRYAG	3 cut(s)	132, 889, 933
BstSLI	GKGCMC	4 cut(s)	831, 1536, 1836, 2387
BstUI	CGCG	2 cut(s)	393, 1176
BstV1I	GCAGC	4 cut(s)	1996, 2188, 2385, 2730
BstV2I	GAAGAC	2 cut(s)	2714, 2741
BstX2I	RGATCY	3 cut(s)	415, 2065, 2355
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	3 cut(s)	415, 2065, 2355
BsuRI	GGCC	4 cut(s)	366, 692, 1961, 2808
BtgI	CCRYGG	1 cut(s)	1962
BtrI	CACGTC	2 cut(s)	214, 235
BtsCI	GGATG	8 cut(s)	48, 205, 247, 615, 636, 987, 1380, 2832
BtsI	GCAGTG	1 cut(s)	2711
BtsIMutI	CAGTG	3 cut(s)	259, 2374, 2711
BtuMI	TCGCGA	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	1982
CciI	TCATGA	1 cut(s)	2620
CfoI	GCGC	1 cut(s)	1176
Cfr13I	GGNCC	5 cut(s)	1701, 2394, 2484, 2807, 2817
CseI	GACGC	3 cut(s)	2068, 2170, 2746
Csp6I	GTAC	5 cut(s)	62, 486, 2295, 2542, 2864
CviAII	CATG	9 cut(s)	1171, 1340, 1523, 1963, 1994, 2143, 2361, 2621, 2662
CviQI	GTAC	5 cut(s)	62, 486, 2295, 2542, 2864
DraI	TTTAAA	2 cut(s)	358, 2857
DraIII	CACNNNGTG	1 cut(s)	2382
DriI	GACNNNNNGTC	1 cut(s)	2482
EaeI	YGGCCR	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	2482
Eco130I	CCWWGG	1 cut(s)	1962
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	1172
Eco47I	GGWCC	4 cut(s)	1701, 2394, 2484, 2817
Eco57I	CTGAAG	7 cut(s)	27, 615, 1892, 2039, 2138, 2726, 2732
Eco88I	CYCGRG	2 cut(s)	1955, 2579
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	2484
EcoT14I	CCWWGG	1 cut(s)	1962
EcoT22I	ATGCAT	2 cut(s)	341, 1524
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	1962
FaeI	CATG	9 cut(s)	1174, 1343, 1526, 1966, 1997, 2146, 2364, 2624, 2665
FalI	AAGNNNNNCTT	2 cut(s)	1374, 1406
FaqI	GGGAC	2 cut(s)	2173, 2470
FatI	CATG	9 cut(s)	1170, 1339, 1522, 1962, 1993, 2142, 2360, 2620, 2661
FauI	CCCGC	2 cut(s)	1817, 2589
FbaI	TGATCA	3 cut(s)	1296, 2551, 2757
FblI	GTMKAC	2 cut(s)	473, 2053
Fnu4HI	GCNGC	6 cut(s)	1985, 2202, 2374, 2440, 2741, 2744
FokI	GGATG	8 cut(s)	35, 212, 254, 602, 643, 994, 1387, 2819
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	6 cut(s)	1985, 2202, 2374, 2440, 2741, 2744
FspBI	CTAG	6 cut(s)	29, 665, 806, 978, 1232, 2063
GlaI	GCGC	1 cut(s)	1175
GluI	GCNGC	6 cut(s)	1985, 2202, 2374, 2440, 2741, 2744
HaeIII	GGCC	4 cut(s)	366, 692, 1961, 2808
HapII	CCGG	2 cut(s)	1811, 2810
HgaI	GACGC	3 cut(s)	2068, 2170, 2746
HhaI	GCGC	1 cut(s)	1176
Hin1I	GRCGYC	1 cut(s)	2738
Hin1II	CATG	9 cut(s)	1174, 1343, 1526, 1966, 1997, 2146, 2364, 2624, 2665
Hin6I	GCGC	1 cut(s)	1174
HinP1I	GCGC	1 cut(s)	1174
HincII	GTYRAC	2 cut(s)	1691, 1974
HindII	GTYRAC	2 cut(s)	1691, 1974
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	2 cut(s)	833, 1436
HpaII	CCGG	2 cut(s)	1811, 2810
HphI	GGTGA	6 cut(s)	106, 1604, 2099, 2105, 2242, 2640
Hpy166II	GTNNAC	8 cut(s)	474, 829, 1534, 1691, 1834, 1974, 2054, 2233
Hpy188III	TCNNGA	7 cut(s)	56, 308, 392, 593, 1483, 1811, 2621
Hpy8I	GTNNAC	8 cut(s)	474, 829, 1534, 1691, 1834, 1974, 2054, 2233
Hpy99I	CGWCG	1 cut(s)	393
HpyCH4III	ACNGT	3 cut(s)	254, 2369, 2863
HpyCH4IV	ACGT	4 cut(s)	213, 234, 1693, 1775
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 302, 440, 1061, 1918, 2068, 2210, 2219, 2382
HpySE526I	ACGT	4 cut(s)	213, 234, 1693, 1775
Hsp92I	GRCGYC	1 cut(s)	2738
Hsp92II	CATG	9 cut(s)	1174, 1343, 1526, 1966, 1997, 2146, 2364, 2624, 2665
HspAI	GCGC	1 cut(s)	1174
KflI	GGGWCCC	1 cut(s)	2484
Kpn2I	TCCGGA	1 cut(s)	1810
Ksp22I	TGATCA	3 cut(s)	1296, 2551, 2757
LmnI	GCTCC	1 cut(s)	1228
Lsp1109I	GCAGC	4 cut(s)	1996, 2188, 2385, 2730
LweI	GCATC	4 cut(s)	142, 1996, 2200, 2623
MaeI	CTAG	6 cut(s)	29, 665, 806, 978, 1232, 2063
MaeII	ACGT	4 cut(s)	213, 234, 1693, 1775
MaeIII	GTNAC	7 cut(s)	952, 1028, 1321, 1787, 1950, 2363, 2646
MfeI	CAATTG	4 cut(s)	35, 438, 2034, 2389
MflI	RGATCY	3 cut(s)	415, 2065, 2355
MhlI	GDGCHC	6 cut(s)	147, 608, 831, 1536, 1836, 2387
MlsI	TGGCCA	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	4 cut(s)	243, 1282, 1381, 2512
Mox20I	TGGCCA	1 cut(s)	366
Mph1103I	ATGCAT	2 cut(s)	341, 1524
MroI	TCCGGA	1 cut(s)	1810
MroXI	GAANNNNTTC	1 cut(s)	1806
MscI	TGGCCA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	1992, 2622
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	2743
MspI	CCGG	2 cut(s)	1811, 2810
MspR9I	CCNGG	1 cut(s)	2810
MunI	CAATTG	4 cut(s)	35, 438, 2034, 2389
Mva1269I	GAATGC	4 cut(s)	339, 1571, 2323, 2517
MvnI	CGCG	2 cut(s)	393, 1176
MwoI	GCNNNNNNNGC	9 cut(s)	137, 302, 440, 1061, 1918, 2068, 2210, 2219, 2382
NciI	CCSGG	1 cut(s)	2810
NcoI	CCATGG	1 cut(s)	1962
NlaIII	CATG	9 cut(s)	1174, 1343, 1526, 1966, 1997, 2146, 2364, 2624, 2665
NlaIV	GGNNCC	4 cut(s)	881, 1514, 2485, 2486
NmeAIII	GCCGAG	1 cut(s)	1766
NmuCI	GTSAC	4 cut(s)	952, 1028, 1787, 2646
NruI	TCGCGA	1 cut(s)	393
NsiI	ATGCAT	2 cut(s)	341, 1524
NspV	TTCGAA	1 cut(s)	797
PacI	TTAATTAA	1 cut(s)	2409
PaeR7I	CTCGAG	1 cut(s)	2579
PagI	TCATGA	1 cut(s)	2620
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	4 cut(s)	339, 1571, 2323, 2517
PdmI	GAANNNNTTC	1 cut(s)	1806
PfeI	GAWTC	1 cut(s)	1436
PkrI	GCNGC	6 cut(s)	1986, 2203, 2375, 2441, 2742, 2745
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
PpuMI	RGGWCCY	1 cut(s)	2484
PshAI	GACNNNNGTC	1 cut(s)	1686
Psp5II	RGGWCCY	1 cut(s)	2484
PspN4I	GGNNCC	4 cut(s)	881, 1514, 2485, 2486
PspPI	GGNCC	5 cut(s)	1701, 2394, 2484, 2807, 2817
PspPPI	RGGWCCY	1 cut(s)	2484
PspXI	VCTCGAGB	1 cut(s)	2579
PsuI	RGATCY	3 cut(s)	415, 2065, 2355
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	5 cut(s)	63, 487, 2296, 2543, 2865
RsaNI	GTAC	5 cut(s)	62, 486, 2295, 2542, 2864
RseI	CAYNNNNRTG	2 cut(s)	1992, 2622
SatI	GCNGC	6 cut(s)	1985, 2202, 2374, 2440, 2741, 2744
Sau96I	GGNCC	5 cut(s)	1701, 2394, 2484, 2807, 2817
ScaI	AGTACT	1 cut(s)	2543
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	2810
SduI	GDGCHC	6 cut(s)	147, 608, 831, 1536, 1836, 2387
SfaNI	GCATC	4 cut(s)	142, 1996, 2200, 2623
SfcI	CTRYAG	3 cut(s)	132, 889, 933
Sfr274I	CTCGAG	1 cut(s)	2579
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	4 cut(s)	1701, 2394, 2484, 2817
SlaI	CTCGAG	1 cut(s)	2579
SmiMI	CAYNNNNRTG	2 cut(s)	1992, 2622
SmlI	CTYRAG	3 cut(s)	1837, 2489, 2579
SmoI	CTYRAG	3 cut(s)	1837, 2489, 2579
SsiI	CCGC	8 cut(s)	1176, 1262, 1699, 1824, 2213, 2439, 2596, 2741
SspI	AATATT	1 cut(s)	1550
SspMI	CTAG	6 cut(s)	29, 665, 806, 978, 1232, 2063
StyD4I	CCNGG	1 cut(s)	2808
StyI	CCWWGG	1 cut(s)	1962
TaaI	ACNGT	3 cut(s)	254, 2369, 2863
TaiI	ACGT	4 cut(s)	216, 237, 1696, 1778
TaqI	TCGA	8 cut(s)	376, 525, 797, 1446, 1800, 2580, 2844, 2886
TatI	WGTACW	2 cut(s)	2541, 2863
TauI	GCSGC	2 cut(s)	2442, 2743
TfiI	GAWTC	1 cut(s)	1436
TscAI	CASTG	3 cut(s)	259, 2374, 2718
TseFI	GTSAC	4 cut(s)	952, 1028, 1787, 2646
TseI	GCWGC	4 cut(s)	1984, 2201, 2373, 2743
Tsp45I	GTSAC	4 cut(s)	952, 1028, 1787, 2646
TspDTI	ATGAA	9 cut(s)	438, 564, 1506, 1578, 1982, 2124, 2240, 2631, 2650
TspGWI	ACGGA	3 cut(s)	10, 172, 2071
TspRI	CASTG	3 cut(s)	259, 2374, 2718
VneI	GTGCAC	3 cut(s)	827, 1532, 1832
VpaK11BI	GGWCC	4 cut(s)	1701, 2394, 2484, 2817
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	8 cut(s)	258, 457, 1092, 1477, 1493, 1780, 2332, 2752
XhoI	CTCGAG	1 cut(s)	2579
XmiI	GTMKAC	2 cut(s)	473, 2053
XmnI	GAANNNNTTC	1 cut(s)	1806
XspI	CTAG	6 cut(s)	29, 665, 806, 978, 1232, 2063
ZrmI	AGTACT	1 cut(s)	2543
Zsp2I	ATGCAT	2 cut(s)	341, 1524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.