AT1G19240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001509
Physical Location & Seq
Reverse (-)
6649243 .. 6650446
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19240.1

Sequence Viewer

Length: 315 bp
ATGGAGGGTTTGGAGAAGTTTTACAGCAAGATGGTGAAAGAAGCGAAATCGGCAGCTTCTTCTTCGTCGTCTTCTCTATCTGATTTTGCGGATAATCTGATGCAAGACAAACGAGCCGCCGCCGGCAACTTGACTACTACATACGACGCAGGATCCGGCACTCTGGTAACCAGACCTCCCAGCGGAGTTTCGGTCTGGACGTGTTCAAAGTTGTGCGCTGTTTTCTTTGTCGCTGGAGTGTTTGTGGGTTATACACTTAAGAGACGGGTTCGACGCTGGGCTTCTAAATTACTGAGAAGAATAAAGGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

9.88

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 89, 117, 120, 183
AclWI GGATC 2 cut(s) 147, 160
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 207
AjiI CACGTC 1 cut(s) 201
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 147, 160
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 46
BamHI GGATCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 54, 117, 120
BlsI GCNGC 3 cut(s) 55, 118, 121
BmgBI CACGTC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 255
BsaXI ACNNNNNCTCC 6 cut(s) 160, 177, 190, 207, 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 122
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 2 cut(s) 179, 276
BsiSI CCGG 2 cut(s) 123, 156
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 4 cut(s) 89, 117, 120, 183
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 147, 160
BspTI CTTAAG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 122
CseI GACGC 2 cut(s) 155, 282
CviJI RGCY 3 cut(s) 56, 116, 281
CviKI_1 RGCY 3 cut(s) 56, 116, 281
DdeI CTNAG 1 cut(s) 293
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 256
FaiI YATR 2 cut(s) 142, 252
Fnu4HI GCNGC 3 cut(s) 54, 117, 120
Fsp4HI GCNGC 3 cut(s) 54, 117, 120
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 54, 117, 120
GsaI CCCAGC 2 cut(s) 183, 280
GsuI CTGGAG 1 cut(s) 255
HapII CCGG 2 cut(s) 123, 156
HgaI GACGC 2 cut(s) 155, 282
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HpaII CCGG 2 cut(s) 123, 156
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 82, 99
Hpy188III TCNNGA 1 cut(s) 196
Hpy99I CGWCG 3 cut(s) 70, 149, 276
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 200
HspAI GCGC 1 cut(s) 216
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 9 cut(s) 135, 136, 149, 169, 181, 184, 193, 219, 262
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 90
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 4 cut(s) 51, 54, 63, 309
MflI RGATCY 1 cut(s) 152
MluCI AATT 1 cut(s) 287
MnlI CCTC 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 122
MseI TTAA 2 cut(s) 258, 313
MspA1I CMGCKG 1 cut(s) 183
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 123, 156
MwoI GCNNNNNNNGC 1 cut(s) 50
NaeI GCCGGC 1 cut(s) 124
NdeII GATC 1 cut(s) 152
NgoMIV GCCGGC 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 55, 118, 121
PspEI GGTNACC 1 cut(s) 166
PspFI CCCAGC 2 cut(s) 179, 276
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 152
SaqAI TTAA 2 cut(s) 258, 313
SatI GCNGC 3 cut(s) 54, 117, 120
Sau3AI GATC 1 cut(s) 152
SetI ASST 3 cut(s) 58, 178, 203
SfaNI GCATC 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 287
SsiI CCGC 4 cut(s) 89, 117, 120, 183
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 271
TaqII GACCGA 1 cut(s) 181
TasI AATT 1 cut(s) 287
TauI GCSGC 2 cut(s) 119, 122
Tru1I TTAA 2 cut(s) 258, 313
Tru9I TTAA 2 cut(s) 258, 313
TseI GCWGC 1 cut(s) 53
Vha464I CTTAAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.