Rh6BG243400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001509
Physical Location & Seq
Reverse (-)
45340718 .. 45341417
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG243400.1

Sequence Viewer

Length: 330 bp
ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTTCCAGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCTTCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCATTCTACTGAGGGCCTCTCTGCCGCTTTCTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCGTTAAATGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

9.41

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 150
AclWI GGATC 2 cut(s) 260, 323
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 3 cut(s) 61, 86, 304
AluI AGCT 3 cut(s) 61, 86, 304
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 260, 323
AoxI GGCC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 122, 139
AvaII GGWCC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 171
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 139
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 53, 210
BseYI CCCAGC 2 cut(s) 248, 291
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 141
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 160, 252, 315
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 282
BspPI GGATC 2 cut(s) 260, 323
BssMI GATC 3 cut(s) 160, 252, 315
BstDEI CTNAG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 3 cut(s) 163, 255, 318
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 160, 252, 315
BstMWI GCNNNNNNNGC 2 cut(s) 245, 288
BstNSI RCATGY 1 cut(s) 219
BstUI CGCG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 122, 139
CseI GACGC 1 cut(s) 288
CviAII CATG 1 cut(s) 216
CviJI RGCY 7 cut(s) 13, 61, 86, 141, 264, 296, 304
CviKI_1 RGCY 7 cut(s) 13, 61, 86, 141, 264, 296, 304
DdeI CTNAG 1 cut(s) 135
DpnI GATC 3 cut(s) 162, 254, 317
DpnII GATC 3 cut(s) 160, 252, 315
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoO109I RGGNCCY 2 cut(s) 122, 139
FaeI CATG 1 cut(s) 219
FaiI YATR 3 cut(s) 176, 217, 267
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
GsaI CCCAGC 2 cut(s) 252, 295
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 288
Hin1II CATG 1 cut(s) 219
HindIII AAGCTT 2 cut(s) 84, 302
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 10, 79, 160
Hpy188III TCNNGA 2 cut(s) 19, 310
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 288
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 3 cut(s) 160, 252, 315
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 8 cut(s) 29, 71, 196, 201, 221, 234, 277, 284
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 162, 254, 317
MboI GATC 3 cut(s) 160, 252, 315
MboII GAAGA 6 cut(s) 87, 90, 93, 96, 99, 102
MfeI CAATTG 1 cut(s) 234
MluCI AATT 1 cut(s) 234
MluI ACGCGT 1 cut(s) 280
MnlI CCTC 6 cut(s) 74, 130, 135, 152, 188, 306
MseI TTAA 1 cut(s) 285
MunI CAATTG 1 cut(s) 234
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 245, 288
NdeII GATC 3 cut(s) 160, 252, 315
NlaIII CATG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 219
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
PspFI CCCAGC 2 cut(s) 248, 291
PspPI GGNCC 2 cut(s) 122, 139
PspPPI RGGWCCY 1 cut(s) 122
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 160, 252, 315
Sau96I GGNCC 2 cut(s) 122, 139
SetI ASST 6 cut(s) 36, 63, 88, 124, 190, 306
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 150
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 192
XceI RCATGY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.