No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19240 |
| fragaria_vesca | FvH4_1g09260 FvH4_1g09260 |
| malus_domestica | MD15G1222700.v1.1 |
| prunus_persica | Prupe.7G193100_v2.0.a1 Prupe.7G193100_v2.0.a1 |
| pyrus_communis | pycom02g07770 pycom15g19680 |
| rosa_chinensis | RchiOBHm_Chr2g0095821 RchiOBHm_Chr2g0103611 |
| rosa_laevigata | RLG00000016597 RLG00000017347 |
| rosa_multiflora | Rmu_sc0000496.1_g000010 Rmu_sc0001238.1_g000010 Rmu_sc0003363.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00146060 Rroxscaffold_4G00310780 |
| rosa_rugosa | Rorug02G0053200 Rorug02G0126000 Rorug02G0126000 Rorug04G0203300 |
| rosa_samantha | Rh2AG164400 Rh2AG179200 Rh2AG241400 Rh2BG102000 Rh2BG103500 Rh2CG104400 Rh2CG105900 Rh2DG185000 Rh2DG249400 Rh3BG249300 Rh4AG107700 Rh4AG208900 Rh4BG029000 Rh4DG241600 Rh5AG535400 Rh5BG482700 Rh5CG507500 Rh6AG064300 Rh6AG237000 Rh6AG238500 Rh6BG243400 Rh7AG209800 |
| rosa_wichuraiana | Rw1G006210 Rw2G007740 Rw3G023630 Rw4G006190 Rw5G035570 Rw6G020630 Rw6G020830 Rw6G025500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 228 |
| AciI | CCGC | 1 cut(s) | 96 |
| AclWI | GGATC | 2 cut(s) | 206, 269 |
| AcuI | CTGAAG | 1 cut(s) | 239 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 140 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AgsI | TTSAA | 1 cut(s) | 65 |
| AluBI | AGCT | 2 cut(s) | 10, 250 |
| AluI | AGCT | 2 cut(s) | 10, 250 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| AlwI | GGATC | 2 cut(s) | 206, 269 |
| AoxI | GGCC | 1 cut(s) | 85 |
| AspS9I | GGNCC | 2 cut(s) | 68, 85 |
| AvaII | GGWCC | 1 cut(s) | 68 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| Bme18I | GGWCC | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 2 cut(s) | 68, 85 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 74, 106 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 140 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseRI | GAGGAG | 1 cut(s) | 156 |
| BseYI | CCCAGC | 2 cut(s) | 194, 237 |
| Bsh1236I | CGCG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsnI | GGCC | 1 cut(s) | 87 |
| Bsp143I | GATC | 3 cut(s) | 106, 198, 261 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 1 cut(s) | 87 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspFNI | CGCG | 1 cut(s) | 228 |
| BspPI | GGATC | 2 cut(s) | 206, 269 |
| BssMI | GATC | 3 cut(s) | 106, 198, 261 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 138 |
| BstFNI | CGCG | 1 cut(s) | 228 |
| BstKTI | GATC | 3 cut(s) | 109, 201, 264 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMBI | GATC | 3 cut(s) | 106, 198, 261 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 191, 234 |
| BstNSI | RCATGY | 1 cut(s) | 165 |
| BstUI | CGCG | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 2 cut(s) | 68, 85 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 1 cut(s) | 162 |
| CviJI | RGCY | 5 cut(s) | 10, 87, 210, 242, 250 |
| CviKI_1 | RGCY | 5 cut(s) | 10, 87, 210, 242, 250 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 3 cut(s) | 108, 200, 263 |
| DpnII | GATC | 3 cut(s) | 106, 198, 261 |
| Eco47I | GGWCC | 1 cut(s) | 68 |
| Eco57I | CTGAAG | 1 cut(s) | 239 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 2 cut(s) | 68, 85 |
| FaeI | CATG | 1 cut(s) | 165 |
| FaiI | YATR | 3 cut(s) | 122, 163, 213 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 1 cut(s) | 161 |
| GsaI | CCCAGC | 2 cut(s) | 198, 241 |
| HaeIII | GGCC | 1 cut(s) | 87 |
| HgaI | GACGC | 1 cut(s) | 234 |
| Hin1II | CATG | 1 cut(s) | 165 |
| HindIII | AAGCTT | 1 cut(s) | 248 |
| HinfI | GANTC | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 1 cut(s) | 159 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 106 |
| Hpy188III | TCNNGA | 1 cut(s) | 256 |
| Hpy8I | GTNNAC | 1 cut(s) | 159 |
| Hpy99I | CGWCG | 1 cut(s) | 228 |
| HpyAV | CCTTC | 1 cut(s) | 59 |
| HpyCH4V | TGCA | 1 cut(s) | 179 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 191, 234 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| Hsp92II | CATG | 1 cut(s) | 165 |
| Kzo9I | GATC | 3 cut(s) | 106, 198, 261 |
| LmnI | GCTCC | 1 cut(s) | 15 |
| LpnPI | CCDG | 7 cut(s) | 20, 142, 147, 167, 180, 223, 230 |
| MalI | GATC | 3 cut(s) | 108, 200, 263 |
| MboI | GATC | 3 cut(s) | 106, 198, 261 |
| MboII | GAAGA | 7 cut(s) | 27, 36, 39, 41, 42, 45, 48 |
| MfeI | CAATTG | 2 cut(s) | 180, 271 |
| MluCI | AATT | 2 cut(s) | 180, 271 |
| MluI | ACGCGT | 1 cut(s) | 226 |
| MnlI | CCTC | 6 cut(s) | 23, 76, 81, 98, 134, 252 |
| MseI | TTAA | 1 cut(s) | 231 |
| MunI | CAATTG | 2 cut(s) | 180, 271 |
| MvnI | CGCG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 191, 234 |
| NdeII | GATC | 3 cut(s) | 106, 198, 261 |
| NlaIII | CATG | 1 cut(s) | 165 |
| NspI | RCATGY | 1 cut(s) | 165 |
| PfeI | GAWTC | 1 cut(s) | 32 |
| PpuMI | RGGWCCY | 1 cut(s) | 68 |
| Psp5II | RGGWCCY | 1 cut(s) | 68 |
| PspFI | CCCAGC | 2 cut(s) | 194, 237 |
| PspPI | GGNCC | 2 cut(s) | 68, 85 |
| PspPPI | RGGWCCY | 1 cut(s) | 68 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| Sau3AI | GATC | 3 cut(s) | 106, 198, 261 |
| Sau96I | GGNCC | 2 cut(s) | 68, 85 |
| SetI | ASST | 4 cut(s) | 12, 70, 136, 252 |
| SinI | GGWCC | 1 cut(s) | 68 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| Sse9I | AATT | 2 cut(s) | 180, 271 |
| SsiI | CCGC | 1 cut(s) | 96 |
| TasI | AATT | 2 cut(s) | 180, 271 |
| TfiI | GAWTC | 1 cut(s) | 32 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TspDTI | ATGAA | 1 cut(s) | 27 |
| VpaK11BI | GGWCC | 1 cut(s) | 68 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 138 |
| XceI | RCATGY | 1 cut(s) | 165 |