Prupe.7G193100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001509
Physical Location & Seq
Reverse (-)
18393301 .. 18395454
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G193100.1

Sequence Viewer

Length: 306 bp
ATGGAGGGTTTGCAGAAGTTGATTGGCAAAGTCTCAAAAGACCCACCAAAATTGGGCAACTCTTCGTCTTCGTCTTCGTCTTCATTTGACAGTCACCGTGCCGGTGAAGGTCTCGCTGCCGCTTTGTCTTCTTCTGATCAGTCTCGTATTCTATTCAACAGACCTGCCAGGCAAGTAGTATCACTGTGGACGTGTTCAAAGCTTTGTACACTTTGCTTTGTTGCTGGAATTGTTGTTGGATATACACTGAAGCGACGCGTCCGAAGCTGGGCTTCCAGACTACTCAAGAGAATCAAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.03

Weight (kDa)

10.29

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccII CGCG 1 cut(s) 258
AciI CCGC 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 53, 268
AflIII ACRYGT 2 cut(s) 191, 256
AgsI TTSAA 2 cut(s) 157, 198
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 2 cut(s) 202, 267
AluI AGCT 2 cut(s) 202, 267
Alw26I GTCTC 3 cut(s) 37, 116, 147
ApeKI GCWGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 86, 116
BbsI GAAGAC 4 cut(s) 60, 66, 72, 120
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 3 cut(s) 37, 116, 147
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 2 cut(s) 117, 120
BlsI GCNGC 2 cut(s) 118, 121
Bme1390I CCNGG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 169
BpiI GAAGAC 4 cut(s) 60, 66, 72, 120
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 268
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 53, 268
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 53, 268
BsmAI GTCTC 3 cut(s) 37, 116, 147
Bso31I GGTCTC 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 120
BspFNI CGCG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 92, 98, 186
Bst6I CTCTTC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 206
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 3 cut(s) 37, 116, 147
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 4 cut(s) 60, 66, 72, 120
BtrI CACGTC 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 182, 245
BveI ACCTGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 101
CseI GACGC 2 cut(s) 247, 264
Csp6I GTAC 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviJI RGCY 3 cut(s) 202, 267, 272
CviKI_1 RGCY 3 cut(s) 202, 267, 272
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 167
FaiI YATR 1 cut(s) 243
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 117, 120
Fsp4HI GCNGC 2 cut(s) 117, 120
GluI GCNGC 2 cut(s) 117, 120
GsaI CCCAGC 1 cut(s) 271
HapII CCGG 1 cut(s) 102
HgaI GACGC 2 cut(s) 247, 264
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 86, 116
Hpy166II GTNNAC 2 cut(s) 189, 209
Hpy188I TCNGA 2 cut(s) 136, 263
Hpy188III TCNNGA 2 cut(s) 276, 286
Hpy8I GTNNAC 2 cut(s) 189, 209
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 3 cut(s) 92, 98, 186
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 115, 154, 177, 181, 210, 253, 289
Lsp1109I GCAGC 1 cut(s) 103
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 6 cut(s) 54, 60, 66, 72, 120, 123
MluCI AATT 2 cut(s) 50, 228
MluI ACGCGT 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 217
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 2 cut(s) 118, 121
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 167
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SatI GCNGC 2 cut(s) 117, 120
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 169
SetI ASST 5 cut(s) 112, 166, 194, 204, 269
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 50, 228
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 92, 98, 186
TaiI ACGT 1 cut(s) 194
TasI AATT 2 cut(s) 50, 228
TatI WGTACW 1 cut(s) 206
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 2 cut(s) 189, 252
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 2 cut(s) 189, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.