Rh5AG535400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001509
Physical Location & Seq
Reverse (-)
91813417 .. 91814112
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG535400.1

Sequence Viewer

Length: 189 bp
ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATAGGAGTGGTGTCCCTATGGACATGCTCAAAGTTCTGTGCATTTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACACGTTAAACGCTGCGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.08

Weight (kDa)

9.45

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 119, 182
AcuI CTGAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 139
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AlwI GGATC 2 cut(s) 119, 182
ApeKI GCWGC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 152
BseGI GGATG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 107
BslFI GGGAC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 111, 174
BspPI GGATC 2 cut(s) 119, 182
BssMI GATC 2 cut(s) 111, 174
BstF5I GGATG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 114, 177
BstMBI GATC 2 cut(s) 111, 174
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 54
CfoI GCGC 1 cut(s) 155
CviAII CATG 1 cut(s) 75
CviJI RGCY 3 cut(s) 13, 123, 163
CviKI_1 RGCY 3 cut(s) 13, 123, 163
DpnI GATC 2 cut(s) 113, 176
DpnII GATC 2 cut(s) 111, 174
Eco57I CTGAAG 1 cut(s) 152
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 70, 76, 126
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 151
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 19, 169
HpyCH4IV ACGT 2 cut(s) 33, 141
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 33, 141
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 111, 174
LpnPI CCDG 3 cut(s) 29, 93, 143
Lsp1109I GCAGC 1 cut(s) 137
MaeII ACGT 2 cut(s) 33, 141
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 113, 176
MboI GATC 2 cut(s) 111, 174
MnlI CCTC 1 cut(s) 165
MseI TTAA 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 111, 174
NlaIII CATG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 78
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 2 cut(s) 111, 174
SetI ASST 3 cut(s) 36, 144, 165
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
TaiI ACGT 2 cut(s) 36, 144
TaqI TCGA 1 cut(s) 18
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 34
XceI RCATGY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.