FvH4_1g09260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001509
Physical Location & Seq
Forward (+)
4944135 .. 4945196
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09260.t2

Sequence Viewer

Length: 315 bp
ATGGAAGGCTTTCAAAATTGGTTCGGCAAAATCAAAGAAGATCTGAAAGCCGCCTCTGAAAAAGTTTCATCCTCCTCTTCTTCTTCTTCATCTGCTTCCTTCAAAGCTCCTGGTTCTGAAGAAGGTCTCTCTGCCGTGTTGTCTGATCAGTCTCGTATCATAGTCGCCAAACCTGTCAGAGGAGTGGTTTCACTGTGGACATGCTCAAAGTTCTGTGCAATTGCTTTTGTTGCTGGGATCATCGTCGGCTATACCCTGAAGCGACGCGTTAAACGCTGGGCTAACAAGCTTCTCAAAAAGATCCGAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.34

Weight (kDa)

9.95

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 245, 295
AcuI CTGAAG 2 cut(s) 138, 278
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 14, 103
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 107, 289
AluI AGCT 2 cut(s) 107, 289
Alw26I GTCTC 2 cut(s) 131, 156
AlwI GGATC 2 cut(s) 245, 295
Asp700I GAANNNNTTC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 131, 156
BglII AGATCT 1 cut(s) 40
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 64, 195
BseYI CCCAGC 2 cut(s) 233, 276
Bsh1236I CGCG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 131, 156
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 4 cut(s) 40, 145, 237, 300
BspACI CCGC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 267
BspPI GGATC 2 cut(s) 245, 295
BspTNI GGTCTC 1 cut(s) 131
BssMI GATC 4 cut(s) 40, 145, 237, 300
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 4 cut(s) 43, 148, 240, 303
BstMAI GTCTC 2 cut(s) 131, 156
BstMBI GATC 4 cut(s) 40, 145, 237, 300
BstMWI GCNNNNNNNGC 2 cut(s) 230, 273
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 40, 300
BstYI RGATCY 2 cut(s) 40, 300
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 191
CseI GACGC 1 cut(s) 273
CviAII CATG 1 cut(s) 201
CviJI RGCY 6 cut(s) 9, 50, 107, 249, 281, 289
CviKI_1 RGCY 6 cut(s) 9, 50, 107, 249, 281, 289
DpnI GATC 4 cut(s) 42, 147, 239, 302
DpnII GATC 4 cut(s) 40, 145, 237, 300
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 138, 278
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 204
FaiI YATR 3 cut(s) 161, 202, 252
FatI CATG 1 cut(s) 200
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 2 cut(s) 237, 280
HgaI GACGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 6 cut(s) 45, 58, 118, 145, 179, 305
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 2 cut(s) 248, 267
HpyAV CCTTC 2 cut(s) 109, 116
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 273
Hsp92II CATG 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 40, 145, 237, 300
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 96, 123, 186, 219, 262, 269
MalI GATC 4 cut(s) 42, 147, 239, 302
MboI GATC 4 cut(s) 40, 145, 237, 300
MboII GAAGA 6 cut(s) 50, 69, 72, 75, 78, 131
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 2 cut(s) 40, 300
MluCI AATT 2 cut(s) 16, 219
MluI ACGCGT 1 cut(s) 265
MnlI CCTC 4 cut(s) 64, 82, 85, 173
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 230, 273
NdeII GATC 4 cut(s) 40, 145, 237, 300
NlaIII CATG 1 cut(s) 204
NspI RCATGY 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 2 cut(s) 233, 276
PspGI CCWGG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 40, 300
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 4 cut(s) 40, 145, 237, 300
ScrFI CCNGG 1 cut(s) 111
SetI ASST 4 cut(s) 109, 127, 175, 291
Sse9I AATT 2 cut(s) 16, 219
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 195
TasI AATT 2 cut(s) 16, 219
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 57, 78
TspRI CASTG 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 177
XceI RCATGY 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.