Rroxscaffold_4G00310780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001509
Physical Location & Seq
Reverse (-)
32910807 .. 32911459
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310780.1

Sequence Viewer

Length: 279 bp
ATGATGTACCCAGCTCCTCCACACCAATCCGAAAAAGCTTCATCATCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACCGAGGGCCTCTCTGCCGCTTTGTCCGATCGGTCTCGTATTATAGTCGCCGGACCTGTTAGGAGTGGTGTCCCCGTGGACATGCTCAAAGTTCGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCACGAAGAAGCGACGCGTTAAACGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.0

Weight (kDa)

10.76

Isoelectric Point (pI)

76.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 206, 272
AfaI GTAC 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 3 cut(s) 14, 38, 253
AluI AGCT 3 cut(s) 14, 38, 253
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 206, 272
AoxI GGCC 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 71, 88, 134
AvaII GGWCC 2 cut(s) 71, 134
BcoDI GTCTC 1 cut(s) 120
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 71, 134
BmgT120I GGNCC 3 cut(s) 71, 88, 134
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 84, 156
BseDI CCNNGG 2 cut(s) 84, 156
BseRI GAGGAG 1 cut(s) 6
BseYI CCCAGC 3 cut(s) 10, 194, 240
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 109, 198, 264
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 231
BspPI GGATC 2 cut(s) 206, 272
BspTNI GGTCTC 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 84, 156
BssMI GATC 3 cut(s) 109, 198, 264
BstDSI CCRYGG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 3 cut(s) 112, 201, 267
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 109, 198, 264
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 191, 237
BstNSI RCATGY 1 cut(s) 166
BstUI CGCG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 71, 88, 134
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 14, 38, 90, 210, 245, 253
CviKI_1 RGCY 6 cut(s) 14, 38, 90, 210, 245, 253
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 111, 200, 266
DpnII GATC 3 cut(s) 109, 198, 264
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 71, 134
EcoO109I RGGNCCY 2 cut(s) 71, 88
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 125, 164, 213
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 3 cut(s) 14, 198, 244
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 237
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 36, 251
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 31, 109
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 237
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 3 cut(s) 109, 198, 264
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 24, 145, 150, 180, 226
MalI GATC 3 cut(s) 111, 200, 266
MboI GATC 3 cut(s) 109, 198, 264
MboII GAAGA 6 cut(s) 39, 42, 45, 48, 51, 232
MfeI CAATTG 1 cut(s) 180
MluCI AATT 1 cut(s) 180
MluI ACGCGT 1 cut(s) 229
MnlI CCTC 5 cut(s) 27, 79, 84, 101, 255
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 180
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 191, 237
NdeII GATC 3 cut(s) 109, 198, 264
NlaIII CATG 1 cut(s) 166
NspI RCATGY 1 cut(s) 166
PkrI GCNGC 1 cut(s) 100
Ple19I CGATCG 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspFI CCCAGC 3 cut(s) 10, 194, 240
PspPI GGNCC 3 cut(s) 71, 88, 134
PspPPI RGGWCCY 1 cut(s) 71
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 3 cut(s) 109, 198, 264
Sau96I GGNCC 3 cut(s) 71, 88, 134
SetI ASST 5 cut(s) 16, 40, 73, 139, 255
SinI GGWCC 2 cut(s) 71, 134
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 99
TaqII GACCGA 1 cut(s) 102
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 71, 134
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.