RLG00000017347

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001509
Physical Location & Seq
Forward (+)
15534335 .. 15534994
660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017347

Sequence Viewer

Length: 306 bp
ATGGAAGGCTTTCAAAAATGGGTCGGAAAAATCTCAAAAGATGTAAAAGCCGTCTCTGAAAAAGCTTCATTATCATCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAAGGCCTCTCTGCCGCTTTTTCCGATCAGTCTCGTATTATAGTTGCCAGACCTGTTAGAGGAGTGGTGTCGCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGAATCATTGTTGGCTATACCCTGAAGCGGCGCATTAAACGCTGGGCTAACAAAGCTTCTCAAGAGGATCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.06

Weight (kDa)

10.18

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 129, 256
AclWI GGATC 1 cut(s) 303
AcuI CTGAAG 2 cut(s) 135, 272
AfiI CCNNNNNNNGG 2 cut(s) 173, 255
AgsI TTSAA 2 cut(s) 14, 98
AluBI AGCT 2 cut(s) 65, 284
AluI AGCT 2 cut(s) 65, 284
Alw26I GTCTC 2 cut(s) 58, 150
AlwI GGATC 1 cut(s) 303
AoxI GGCC 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 58, 150
BisI GCNGC 2 cut(s) 129, 257
BlsI GCNGC 2 cut(s) 130, 258
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 255
BseLI CCNNNNNNNGG 2 cut(s) 173, 255
BseRI GAGGAG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 270
BshFI GGCC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 173, 255
BsmAI GTCTC 2 cut(s) 58, 150
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 139, 295
BspACI CCGC 2 cut(s) 129, 256
BspANI GGCC 1 cut(s) 120
BspPI GGATC 1 cut(s) 303
BssMI GATC 2 cut(s) 139, 295
BstENI CCTNNNNNAGG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 2 cut(s) 142, 298
BstMAI GTCTC 2 cut(s) 58, 150
BstMBI GATC 2 cut(s) 139, 295
BstMWI GCNNNNNNNGC 3 cut(s) 224, 267, 281
BstNSI RCATGY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 120
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 1 cut(s) 195
CviJI RGCY 7 cut(s) 9, 50, 65, 120, 243, 275, 284
CviKI_1 RGCY 7 cut(s) 9, 50, 65, 120, 243, 275, 284
DpnI GATC 2 cut(s) 141, 297
DpnII GATC 2 cut(s) 139, 295
Eco147I AGGCCT 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 135, 272
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 198
FaiI YATR 3 cut(s) 155, 196, 246
FatI CATG 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 129, 257
Fsp4HI GCNGC 2 cut(s) 129, 257
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 129, 257
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 120
HhaI GCGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 63, 282
HinfI GANTC 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 26, 58, 139, 300
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 92, 110
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 267, 281
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 139, 295
LpnPI CCDG 5 cut(s) 175, 180, 213, 256, 263
MalI GATC 2 cut(s) 141, 297
MboI GATC 2 cut(s) 139, 295
MboII GAAGA 5 cut(s) 69, 72, 75, 78, 81
MfeI CAATTG 1 cut(s) 213
MluCI AATT 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 4 cut(s) 114, 131, 167, 286
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 264
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 224, 267, 281
NdeII GATC 2 cut(s) 139, 295
NlaIII CATG 1 cut(s) 198
NspI RCATGY 1 cut(s) 198
PceI AGGCCT 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 2 cut(s) 130, 258
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 129, 257
Sau3AI GATC 2 cut(s) 139, 295
Sau96I GGNCC 1 cut(s) 101
SetI ASST 4 cut(s) 67, 103, 169, 286
SgeI CNNG 9 cut(s) 117, 159, 174, 179, 207, 240, 262, 283, 302
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 1 cut(s) 213
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 2 cut(s) 129, 256
StuI AGGCCT 1 cut(s) 120
TasI AATT 1 cut(s) 213
TauI GCSGC 2 cut(s) 131, 259
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 171
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.