Rh5CG507500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001509
Physical Location & Seq
Reverse (-)
70612258 .. 70615011
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG507500.1

Sequence Viewer

Length: 534 bp
ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCAGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAGGGCCTCTCTGCCGCTTTGTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCATTAAACGCTGCGCTAACAAGCTTCTCAAGAGGATCAAAAACTACTATGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCACTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCTCCTCCTCCGCCCTCCACGACCTCTCCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.94

Weight (kDa)

9.17

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 147, 475, 480, 490, 510
AclWI GGATC 2 cut(s) 257, 320
AcuI CTGAAG 2 cut(s) 290, 377
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 116, 347, 412
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 5 cut(s) 61, 86, 301, 394, 499
AluI AGCT 5 cut(s) 61, 86, 301, 394, 499
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 257, 320
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 119, 136
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 355, 379
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 2 cut(s) 147, 289
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 2 cut(s) 148, 290
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 119, 136
BmrFI CCNGG 1 cut(s) 455
BplI GAGNNNNNCTC 4 cut(s) 125, 157, 488, 520
BpmI CTGGAG 2 cut(s) 437, 458
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 290
BsaXI ACNNNNNCTCC 1 cut(s) 509
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 455
BseGI GGATG 2 cut(s) 54, 471
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 123, 386
BseRI GAGGAG 4 cut(s) 53, 207, 493, 496
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 5 cut(s) 157, 249, 312, 349, 433
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 5 cut(s) 147, 475, 480, 490, 510
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 124, 387
BspPI GGATC 2 cut(s) 257, 320
BssMI GATC 5 cut(s) 157, 249, 312, 349, 433
Bst2UI CCWGG 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 132, 395
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 54, 471
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 5 cut(s) 160, 252, 315, 352, 436
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 5 cut(s) 157, 249, 312, 349, 433
BstMWI GCNNNNNNNGC 2 cut(s) 242, 285
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 2 cut(s) 216, 344
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 54, 471
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 119, 136
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 55
CviAII CATG 2 cut(s) 213, 341
CviJI RGCY 8 cut(s) 13, 61, 86, 138, 261, 301, 394, 499
CviKI_1 RGCY 8 cut(s) 13, 61, 86, 138, 261, 301, 394, 499
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 132, 395
DpnI GATC 5 cut(s) 159, 251, 314, 351, 435
DpnII GATC 5 cut(s) 157, 249, 312, 349, 433
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 290, 377
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 119, 136
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 2 cut(s) 216, 344
FaiI YATR 6 cut(s) 173, 214, 264, 327, 336, 342
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 212, 340
FauI CCCGC 1 cut(s) 497
Fnu4HI GCNGC 2 cut(s) 147, 289
FokI GGATG 2 cut(s) 61, 458
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 2 cut(s) 147, 289
GlaI GCGC 1 cut(s) 292
GluI GCNGC 2 cut(s) 147, 289
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 2 cut(s) 437, 458
HaeIII GGCC 1 cut(s) 138
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 216, 344
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 84, 299
HinfI GANTC 2 cut(s) 5, 458
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 4 cut(s) 10, 79, 157, 533
Hpy188III TCNNGA 3 cut(s) 19, 307, 437
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 110, 406
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 230, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 285
HpyF3I CTNAG 2 cut(s) 132, 395
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 216, 344
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 5 cut(s) 157, 249, 312, 349, 433
LmnI GCTCC 2 cut(s) 66, 403
Lsp1109I GCAGC 1 cut(s) 275
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 159, 251, 314, 351, 435
MboI GATC 5 cut(s) 157, 249, 312, 349, 433
MboII GAAGA 9 cut(s) 87, 90, 93, 96, 99, 359, 370, 392, 440
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 452
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 242, 285
NdeII GATC 5 cut(s) 157, 249, 312, 349, 433
NlaIII CATG 2 cut(s) 216, 344
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 216, 344
PaeR7I CTCGAG 1 cut(s) 494
PfeI GAWTC 1 cut(s) 5
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 2 cut(s) 148, 290
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PpuMI RGGWCCY 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 453
PspPI GGNCC 2 cut(s) 119, 136
PspPPI RGGWCCY 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 494
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 147, 289
Sau3AI GATC 5 cut(s) 157, 249, 312, 349, 433
Sau96I GGNCC 2 cut(s) 119, 136
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 305, 494
SmoI CTYRAG 2 cut(s) 305, 494
Sse9I AATT 1 cut(s) 231
SsiI CCGC 5 cut(s) 147, 475, 480, 490, 510
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 18, 352, 495
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 189
XceI RCATGY 2 cut(s) 216, 344
XhoI CTCGAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.