Rmu_sc0003363.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003363.1
OG0001509
Physical Location & Seq
Reverse (-)
90541 .. 91236
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003363.1_g000017.1.cds

Sequence Viewer

Length: 327 bp
atggattccgagcctttcgagagagaaaagaacgtgacttttctggggatgatgtaccagctcctcccacaccaatccgaaaaagcttcatcatcttcttcttcttcttcctttgaaggtcctcgttctactgagggcctctctgccgctttgtccgatcagtctcgtattatagtcgccagacctgttagaggagtggtgtccctgtggacatgctcaaagttctgtgcaattgcctttgttgctgggatcattgttggctataccctgaagcgacgcattaaacgctgcgctaacaagcttctcaagaggatcaaagacgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

9.72

Isoelectric Point (pI)

61.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 257, 320
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 3 cut(s) 61, 86, 301
AluI AGCT 3 cut(s) 61, 86, 301
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 257, 320
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 119, 136
AvaII GGWCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 2 cut(s) 147, 289
BlsI GCNGC 2 cut(s) 148, 290
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 136
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 53, 207
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 157, 249, 312
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 257, 320
BssMI GATC 3 cut(s) 157, 249, 312
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 160, 252, 315
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 157, 249, 312
BstMWI GCNNNNNNNGC 2 cut(s) 242, 285
BstNSI RCATGY 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 54
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 119, 136
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 213
CviJI RGCY 6 cut(s) 13, 61, 86, 138, 261, 301
CviKI_1 RGCY 6 cut(s) 13, 61, 86, 138, 261, 301
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 159, 251, 314
DpnII GATC 3 cut(s) 157, 249, 312
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 119, 136
FaeI CATG 1 cut(s) 216
FaiI YATR 3 cut(s) 173, 214, 264
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 147, 289
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 147, 289
GlaI GCGC 1 cut(s) 292
GluI GCNGC 2 cut(s) 147, 289
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 138
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 293
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 84, 299
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 10, 79, 157
Hpy188III TCNNGA 2 cut(s) 19, 307
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 285
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 157, 249, 312
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 29, 71, 193, 198, 218, 231, 281
Lsp1109I GCAGC 1 cut(s) 275
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 159, 251, 314
MboI GATC 3 cut(s) 157, 249, 312
MboII GAAGA 5 cut(s) 87, 90, 93, 96, 99
MfeI CAATTG 1 cut(s) 231
MluCI AATT 1 cut(s) 231
MnlI CCTC 6 cut(s) 74, 127, 132, 149, 185, 303
MseI TTAA 1 cut(s) 282
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 242, 285
NdeII GATC 3 cut(s) 157, 249, 312
NlaIII CATG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 216
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 148, 290
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 119, 136
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 147, 289
Sau3AI GATC 3 cut(s) 157, 249, 312
Sau96I GGNCC 2 cut(s) 119, 136
SetI ASST 6 cut(s) 36, 63, 88, 121, 187, 303
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 147
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.