RLG00000016597

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001509
Physical Location & Seq
Forward (+)
8100489 .. 8101566
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016597

Sequence Viewer

Length: 312 bp
ATGGAGGGCTTTAAAAAATGGGTCGGCAAAATCTCAAAAGATGTAAAAGCCGCCTCTGAAAAAGCTTCATCATCATCATCATCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAAGGCCTCTCTGCCGCTTTGTCCGACCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCGCTGTGGACATGCTCAAAGTTCTGTGCACTTGCCTTTATTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCGTTAAACGCTGGGCTAACAAGATTCTCAAGAGGATTAGAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.25

Weight (kDa)

10.44

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AciI CCGC 2 cut(s) 51, 132
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 138, 275
AfiI CCNNNNNNNGG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 153, 297
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 121
ApaLI GTGCAC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 153, 297
BisI GCNGC 2 cut(s) 51, 132
BlsI GCNGC 2 cut(s) 52, 133
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 217
BseYI CCCAGC 2 cut(s) 230, 273
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 153, 297
BsmBI CGTCTC 1 cut(s) 297
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 2 cut(s) 51, 132
BspANI GGCC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 264
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 145
BssMI GATC 1 cut(s) 234
BstENI CCTNNNNNAGG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 2 cut(s) 153, 297
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 227, 270
BstNSI RCATGY 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 270
CviAII CATG 1 cut(s) 198
CviJI RGCY 6 cut(s) 9, 50, 65, 123, 246, 278
CviKI_1 RGCY 6 cut(s) 9, 50, 65, 123, 246, 278
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraI TTTAAA 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 2 cut(s) 138, 275
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 1 cut(s) 201
FaiI YATR 3 cut(s) 158, 199, 249
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 51, 132
Fsp4HI GCNGC 2 cut(s) 51, 132
GluI GCNGC 2 cut(s) 51, 132
GsaI CCCAGC 2 cut(s) 234, 277
HaeIII GGCC 1 cut(s) 123
HgaI GACGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 195, 215
Hpy188I TCNGA 2 cut(s) 58, 142
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 2 cut(s) 195, 215
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 95, 113
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 270
Hsp92II CATG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 6 cut(s) 158, 178, 183, 216, 259, 266
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 4 cut(s) 75, 78, 81, 84
MhlI GDGCHC 1 cut(s) 217
MluI ACGCGT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 5 cut(s) 64, 117, 134, 170, 288
MseI TTAA 2 cut(s) 12, 267
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 227, 270
NdeII GATC 1 cut(s) 234
NlaIII CATG 1 cut(s) 201
NspI RCATGY 1 cut(s) 201
PceI AGGCCT 1 cut(s) 123
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 52, 133
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
PspFI CCCAGC 2 cut(s) 230, 273
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 12, 267
SatI GCNGC 2 cut(s) 51, 132
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 67, 106, 172
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 2 cut(s) 51, 132
StuI AGGCCT 1 cut(s) 123
TauI GCSGC 2 cut(s) 53, 134
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 12, 267
Tru9I TTAA 2 cut(s) 12, 267
TspDTI ATGAA 1 cut(s) 57
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 174
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.