Rh4BG029000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001509
Physical Location & Seq
Forward (+)
5127332 .. 5127979
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG029000.1

Sequence Viewer

Length: 279 bp
ATGATGTACCAGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAGGGCCTCTCTGCCGCTTTGTCTAATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCGTTAAACGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

10.5

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 209, 272
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 3 cut(s) 13, 38, 253
AluI AGCT 3 cut(s) 13, 38, 253
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 209, 272
AoxI GGCC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 71, 88
AvaII GGWCC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 120
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 88
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpuEI CTTGAG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 5, 159
BseYI CCCAGC 2 cut(s) 197, 240
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 201, 264
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 1 cut(s) 231
BspPI GGATC 2 cut(s) 209, 272
BssMI GATC 2 cut(s) 201, 264
BstDEI CTNAG 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 2 cut(s) 204, 267
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 201, 264
BstMWI GCNNNNNNNGC 2 cut(s) 194, 237
BstNSI RCATGY 1 cut(s) 168
BstUI CGCG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 71, 88
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 165
CviJI RGCY 6 cut(s) 13, 38, 90, 213, 245, 253
CviKI_1 RGCY 6 cut(s) 13, 38, 90, 213, 245, 253
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 203, 266
DpnII GATC 2 cut(s) 201, 264
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 2 cut(s) 71, 88
FaeI CATG 1 cut(s) 168
FaiI YATR 3 cut(s) 125, 166, 216
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 2 cut(s) 201, 244
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 237
Hin1II CATG 1 cut(s) 168
HindIII AAGCTT 2 cut(s) 36, 251
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 237
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 201, 264
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 7 cut(s) 23, 145, 150, 170, 183, 226, 233
MalI GATC 2 cut(s) 203, 266
MboI GATC 2 cut(s) 201, 264
MboII GAAGA 5 cut(s) 39, 42, 45, 48, 51
MfeI CAATTG 1 cut(s) 183
MluCI AATT 1 cut(s) 183
MluI ACGCGT 1 cut(s) 229
MnlI CCTC 6 cut(s) 26, 79, 84, 101, 137, 255
MseI TTAA 1 cut(s) 234
MunI CAATTG 1 cut(s) 183
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 194, 237
NdeII GATC 2 cut(s) 201, 264
NlaIII CATG 1 cut(s) 168
NspI RCATGY 1 cut(s) 168
PkrI GCNGC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspFI CCCAGC 2 cut(s) 197, 240
PspPI GGNCC 2 cut(s) 71, 88
PspPPI RGGWCCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 201, 264
Sau96I GGNCC 2 cut(s) 71, 88
SetI ASST 5 cut(s) 15, 40, 73, 139, 255
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 99
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 141
XceI RCATGY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.