Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001509

Physical Location & Seq

Genomic Coordinates Reverse (-)

76905410 .. 76907804

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG482700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCAGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCTTCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAGGGCCTCTCTGCCGCTTTGTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCATTAAACGCTGCGCTAACAAGCTTCTCAAGAGGATCAAAAACTACTATGGTAAATTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCACTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCTCCTCCTCCGCCCTCCACGACCTCTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.57

Weight (kDa)

9.14

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19240
fragaria_vesca	FvH4_1g09260 FvH4_1g09260
malus_domestica	MD15G1222700.v1.1
prunus_persica	Prupe.7G193100_v2.0.a1 Prupe.7G193100_v2.0.a1
pyrus_communis	pycom02g07770 pycom15g19680
rosa_chinensis	RchiOBHm_Chr2g0095821 RchiOBHm_Chr2g0103611
rosa_laevigata	RLG00000016597 RLG00000017347
rosa_multiflora	Rmu_sc0000496.1_g000010 Rmu_sc0001238.1_g000010 Rmu_sc0003363.1_g000017
rosa_roxburghii	Rroxscaffold_2G00146060 Rroxscaffold_4G00310780
rosa_rugosa	Rorug02G0053200 Rorug02G0126000 Rorug02G0126000 Rorug04G0203300
rosa_samantha	Rh2AG164400 Rh2AG179200 Rh2AG241400 Rh2BG102000 Rh2BG103500 Rh2CG104400 Rh2CG105900 Rh2DG185000 Rh2DG249400 Rh3BG249300 Rh4AG107700 Rh4AG208900 Rh4BG029000 Rh4DG241600 Rh5AG535400 Rh5BG482700 Rh5CG507500 Rh6AG064300 Rh6AG237000 Rh6AG238500 Rh6BG243400 Rh7AG209800
rosa_wichuraiana	Rw1G006210 Rw2G007740 Rw3G023630 Rw4G006190 Rw5G035570 Rw6G020630 Rw6G020830 Rw6G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	147, 577, 582, 592, 612
AclWI	GGATC	2 cut(s)	257, 320
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	290, 479
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	116, 449, 514
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	6 cut(s)	61, 86, 301, 388, 496, 601
AluI	AGCT	6 cut(s)	61, 86, 301, 388, 496, 601
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	257, 320
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	119, 136
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	457, 481
BciT130I	CCWGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	2 cut(s)	147, 289
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	2 cut(s)	148, 290
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	119, 136
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	557
BplI	GAGNNNNNCTC	4 cut(s)	125, 157, 590, 622
BpmI	CTGGAG	2 cut(s)	539, 560
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	290
BsaXI	ACNNNNNCTCC	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	54, 573
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	123, 488
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	4 cut(s)	53, 207, 595, 598
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	596
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	157, 249, 312, 451, 535
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	5 cut(s)	147, 577, 582, 592, 612
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	124, 489
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	257, 320
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	5 cut(s)	157, 249, 312, 451, 535
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	132, 497
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	54, 573
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	5 cut(s)	160, 252, 315, 454, 538
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	5 cut(s)	157, 249, 312, 451, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 285
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	2 cut(s)	216, 446
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	54, 573
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	412, 525
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	119, 136
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	213, 443
CviJI	RGCY	9 cut(s)	13, 61, 86, 138, 261, 301, 388, 496, 601
CviKI_1	RGCY	9 cut(s)	13, 61, 86, 138, 261, 301, 388, 496, 601
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	132, 497
DpnI	GATC	5 cut(s)	159, 251, 314, 453, 537
DpnII	GATC	5 cut(s)	157, 249, 312, 451, 535
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	290, 479
Eco88I	CYCGRG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	119, 136
EcoRII	CCWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	603
FaeI	CATG	2 cut(s)	216, 446
FaiI	YATR	6 cut(s)	173, 214, 264, 327, 438, 444
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	212, 442
FauI	CCCGC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	147, 289
FokI	GGATG	2 cut(s)	61, 560
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	147, 289
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	147, 289
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	2 cut(s)	539, 560
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	216, 446
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	2 cut(s)	84, 299
HinfI	GANTC	3 cut(s)	5, 374, 560
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	5 cut(s)	10, 79, 157, 397, 635
Hpy188III	TCNNGA	3 cut(s)	19, 307, 539
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	2 cut(s)	110, 508
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	230, 410, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 285
HpyF3I	CTNAG	2 cut(s)	132, 497
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	216, 446
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	5 cut(s)	157, 249, 312, 451, 535
LmnI	GCTCC	2 cut(s)	66, 505
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	5 cut(s)	159, 251, 314, 453, 537
MboI	GATC	5 cut(s)	157, 249, 312, 451, 535
MboII	GAAGA	9 cut(s)	87, 90, 93, 96, 99, 461, 472, 494, 542
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	3 cut(s)	231, 332, 413
MlyI	GAGTC	2 cut(s)	368, 554
MseI	TTAA	2 cut(s)	282, 401
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	242, 285
NdeII	GATC	5 cut(s)	157, 249, 312, 451, 535
NlaIII	CATG	2 cut(s)	216, 446
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	216, 446
PaeR7I	CTCGAG	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	148, 290
PleI	GAGTC	2 cut(s)	368, 554
PpsI	GAGTC	2 cut(s)	368, 554
PpuMI	RGGWCCY	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	119, 136
PspPPI	RGGWCCY	1 cut(s)	119
PspXI	VCTCGAGB	1 cut(s)	596
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	282, 401
SatI	GCNGC	2 cut(s)	147, 289
Sau3AI	GATC	5 cut(s)	157, 249, 312, 451, 535
Sau96I	GGNCC	2 cut(s)	119, 136
SchI	GAGTC	2 cut(s)	368, 554
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	305, 596
SmoI	CTYRAG	2 cut(s)	305, 596
Sse9I	AATT	3 cut(s)	231, 332, 413
SsiI	CCGC	5 cut(s)	147, 577, 582, 592, 612
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	18, 454, 597
TasI	AATT	3 cut(s)	231, 332, 413
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	282, 401
Tru9I	TTAA	2 cut(s)	282, 401
TscAI	CASTG	2 cut(s)	412, 525
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	412, 525
VpaK11BI	GGWCC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	216, 446
XhoI	CTCGAG	1 cut(s)	596
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.