Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001509

Physical Location & Seq

Genomic Coordinates Forward (+)

45155283 .. 45168775

Gene Structure 13493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAAATGGATGATATAAATGCTGATAACTTGACAGAAGCTGGAGCTTCATCTATTTCTGCATCTTCTAAGAAAACTAGATTCACTAGTAATGTTTGGGAGTTTTTTGAAAGGGTTCAAGTTAATGATCATGGAACTATGGTACCAAAAAATAAATGTGGGGTTTGTAAGACATTGCTTAGAGGTGGTGCAAGTGCTGGTCCTCGTTCTACTGAGGGCCTCTCTGCCGCTTTGTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCGTTAAACGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.78

Weight (kDa)

10.09

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19240
fragaria_vesca	FvH4_1g09260 FvH4_1g09260
malus_domestica	MD15G1222700.v1.1
prunus_persica	Prupe.7G193100_v2.0.a1 Prupe.7G193100_v2.0.a1
pyrus_communis	pycom02g07770 pycom15g19680
rosa_chinensis	RchiOBHm_Chr2g0095821 RchiOBHm_Chr2g0103611
rosa_laevigata	RLG00000016597 RLG00000017347
rosa_multiflora	Rmu_sc0000496.1_g000010 Rmu_sc0001238.1_g000010 Rmu_sc0003363.1_g000017
rosa_roxburghii	Rroxscaffold_2G00146060 Rroxscaffold_4G00310780
rosa_rugosa	Rorug02G0053200 Rorug02G0126000 Rorug02G0126000 Rorug04G0203300
rosa_samantha	Rh2AG164400 Rh2AG179200 Rh2AG241400 Rh2BG102000 Rh2BG103500 Rh2CG104400 Rh2CG105900 Rh2DG185000 Rh2DG249400 Rh3BG249300 Rh4AG107700 Rh4AG208900 Rh4BG029000 Rh4DG241600 Rh5AG535400 Rh5BG482700 Rh5CG507500 Rh6AG064300 Rh6AG237000 Rh6AG238500 Rh6BG243400 Rh7AG209800
rosa_wichuraiana	Rw1G006210 Rw2G007740 Rw3G023630 Rw4G006190 Rw5G035570 Rw6G020630 Rw6G020830 Rw6G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	338, 401
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	110, 119
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	3 cut(s)	41, 47, 382
AluI	AGCT	3 cut(s)	41, 47, 382
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	338, 401
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	200, 217
AvaII	GGWCC	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanI	GGYRCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	2 cut(s)	78, 87
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 217
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	288
BseYI	CCCAGC	2 cut(s)	326, 369
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	127, 238, 330, 393
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	338, 401
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	173
BssMI	GATC	4 cut(s)	127, 238, 330, 393
BstDEI	CTNAG	3 cut(s)	69, 179, 213
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	130, 241, 333, 396
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	127, 238, 330, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 366
BstNSI	RCATGY	1 cut(s)	297
BstUI	CGCG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	200, 217
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	131, 294
CviJI	RGCY	6 cut(s)	41, 47, 219, 342, 374, 382
CviKI_1	RGCY	6 cut(s)	41, 47, 219, 342, 374, 382
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	3 cut(s)	69, 179, 213
DpnI	GATC	4 cut(s)	129, 240, 332, 395
DpnII	GATC	4 cut(s)	127, 238, 330, 393
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	217
FaeI	CATG	2 cut(s)	134, 297
FaiI	YATR	6 cut(s)	17, 132, 140, 254, 295, 345
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	130, 293
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	78, 87
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	2 cut(s)	330, 373
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	134, 297
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	62, 191, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 366
HpyF3I	CTNAG	3 cut(s)	69, 179, 213
Hsp92II	CATG	2 cut(s)	134, 297
KpnI	GGTACC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	127, 238, 330, 393
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	27, 183, 274, 279, 299, 312, 355, 362
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	78, 87
MalI	GATC	4 cut(s)	129, 240, 332, 395
MboI	GATC	4 cut(s)	127, 238, 330, 393
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	312
MluCI	AATT	1 cut(s)	312
MluI	ACGCGT	1 cut(s)	358
MnlI	CCTC	6 cut(s)	176, 208, 213, 230, 266, 384
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	123, 363
MunI	CAATTG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	323, 366
NdeII	GATC	4 cut(s)	127, 238, 330, 393
NlaIII	CATG	2 cut(s)	134, 297
NlaIV	GGNNCC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	229
PspFI	CCCAGC	2 cut(s)	326, 369
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	200, 217
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	123, 363
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	127, 238, 330, 393
Sau96I	GGNCC	2 cut(s)	200, 217
SetI	ASST	5 cut(s)	43, 49, 187, 268, 384
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	78, 87
TasI	AATT	1 cut(s)	312
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	123, 363
Tru9I	TTAA	2 cut(s)	123, 363
TspDTI	ATGAA	2 cut(s)	17, 39
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	78, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.