AT1G21065

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010467
Physical Location & Seq
Forward (+)
7374115 .. 7375789
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21065.1

Sequence Viewer

Length: 654 bp
ATGGTGATGATGGTGAAAGTGAAAGGCCTTATTGGGAGGTTTTGGTTTGGAGTTGGAGGTGGGATTGTGTTGGCCATTGTTGTTGTTATTATTGGGCTTAGAGGAACACAAAAAGCTATGAGCTCGACGTTCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACTCCAGCTAATCCGGCTACCGATAGAGCTTCAATGGCGAGTTCCTCTGGTGCTAAGTGGGCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATACTATGGAAGGTCCTGATGACATGCCAGCTCATATCAAGTCATCAATGTTTGGATGTCAACTCACAATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGGGAATATGGCTCTGTGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

217

Amino Acids

23.71

Weight (kDa)

9.54

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 95 - 213 4.6e-42 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 454
AgsI TTSAA 4 cut(s) 207, 301, 331, 433
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 5 cut(s) 116, 123, 182, 203, 503
AluI AGCT 5 cut(s) 116, 123, 182, 203, 503
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 392
AoxI GGCC 2 cut(s) 25, 72
ApoI RAATTY 1 cut(s) 454
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 16, 25
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 2 cut(s) 125, 238
BbsI GAAGAC 2 cut(s) 321, 343
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 2 cut(s) 4, 254
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 1 cut(s) 652
BfoI RGCGCY 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 2 cut(s) 321, 343
BpmI CTGGAG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 278, 533
BseMII CTCAG 4 cut(s) 251, 411, 438, 577
BshFI GGCC 2 cut(s) 27, 74
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 27, 74
Bsp1286I GDGCHC 2 cut(s) 125, 238
Bsp143I GATC 2 cut(s) 164, 397
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 27, 74
BspCNI CTCAG 4 cut(s) 250, 412, 439, 576
BspPI GGATC 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 2 cut(s) 164, 397
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 501, 622
BstDEI CTNAG 6 cut(s) 98, 228, 237, 420, 447, 563
BstF5I GGATG 2 cut(s) 278, 533
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 167, 400
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 2 cut(s) 164, 397
BstMWI GCNNNNNNNGC 6 cut(s) 188, 209, 233, 259, 469, 617
BstNSI RCATGY 1 cut(s) 499
BstV2I GAAGAC 2 cut(s) 321, 343
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 27, 74
BtsCI GGATG 2 cut(s) 278, 533
Cac8I GCNNGC 2 cut(s) 501, 622
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 485
CviAII CATG 3 cut(s) 347, 496, 568
DdeI CTNAG 6 cut(s) 98, 228, 237, 420, 447, 563
DpnI GATC 2 cut(s) 166, 399
DpnII GATC 2 cut(s) 164, 397
EaeI YGGCCR 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 125, 238
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 464
EcoT38I GRGCYC 2 cut(s) 125, 238
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 3 cut(s) 350, 499, 571
FaiI YATR 9 cut(s) 119, 348, 396, 474, 479, 497, 507, 569, 589
FatI CATG 3 cut(s) 346, 495, 567
FokI GGATG 2 cut(s) 285, 540
FriOI GRGCYC 2 cut(s) 125, 238
FspBI CTAG 1 cut(s) 652
GlaI GCGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 27, 74
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 463
Hin1II CATG 3 cut(s) 350, 499, 571
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 533
HindII GTYRAC 1 cut(s) 533
HinfI GANTC 2 cut(s) 175, 648
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 16, 25
Hpy166II GTNNAC 2 cut(s) 533, 599
Hpy188I TCNGA 3 cut(s) 240, 325, 378
Hpy188III TCNNGA 4 cut(s) 401, 430, 446, 488
Hpy8I GTNNAC 2 cut(s) 533, 599
Hpy99I CGWCG 2 cut(s) 130, 270
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 2 cut(s) 128, 265
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 209, 233, 259, 469, 617
HpyF3I CTNAG 6 cut(s) 98, 228, 237, 420, 447, 563
HpySE526I ACGT 2 cut(s) 128, 265
Hsp92II CATG 3 cut(s) 350, 499, 571
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 2 cut(s) 164, 397
LmnI GCTCC 1 cut(s) 616
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 652
MaeII ACGT 2 cut(s) 128, 265
MaeIII GTNAC 1 cut(s) 634
MalI GATC 2 cut(s) 166, 399
MboI GATC 2 cut(s) 164, 397
MboII GAAGA 2 cut(s) 326, 343
MfeI CAATTG 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 125, 238
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 3 cut(s) 331, 391, 454
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 34, 638
MnlI CCTC 7 cut(s) 30, 50, 95, 162, 229, 442, 462
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 2 cut(s) 366, 606
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 331
MwoI GCNNNNNNNGC 6 cut(s) 188, 209, 233, 259, 469, 617
NdeII GATC 2 cut(s) 164, 397
NlaIII CATG 3 cut(s) 350, 499, 571
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 366
PceI AGGCCT 1 cut(s) 27
PfeI GAWTC 1 cut(s) 648
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 485
PspPI GGNCC 1 cut(s) 485
PspPPI RGGWCCY 1 cut(s) 485
RseI CAYNNNNRTG 2 cut(s) 366, 606
SacI GAGCTC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 164, 397
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 2 cut(s) 125, 238
SfaNI GCATC 1 cut(s) 598
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 366, 606
Sse9I AATT 3 cut(s) 331, 391, 454
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 652
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 27
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 2 cut(s) 131, 268
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 331, 391, 454
TfiI GAWTC 1 cut(s) 648
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 454
XceI RCATGY 1 cut(s) 499
XspI CTAG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.