RLG00000002454

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010467
Physical Location & Seq
Reverse (-)
34408129 .. 34410581
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002454

Sequence Viewer

Length: 396 bp
ATGCAACTGTCGTTCCTCTCTGTGGCGAAGCCCCTCTCAGTCTCATCTGCGGTTCGCATCAACTGTTCATTGTTCACTGCCCCAAGCACCACCGACCCCCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGACCCAGAAGACCATAACTCTTCCTCCCCAGAGAAGGGGTTGCCATCTCATCACCCCTAAGGGGGCATCTGCACCGTGGAGACATACCCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGAAATATGGTTGTGCGAGCATCGTAACGAACCTAGTGCTCGGAAAGTTGTGGTCACCCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

132

Amino Acids

14.28

Weight (kDa)

9.56

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 61 - 127 1.4e-21 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AfiI CCNNNNNNNGG 5 cut(s) 22, 165, 166, 192, 193
AgsI TTSAA 2 cut(s) 108, 224
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 116, 304
AluI AGCT 2 cut(s) 116, 304
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 46, 205
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 113, 270
AspS9I GGNCC 3 cut(s) 122, 132, 227
AsuHPI GGTGA 2 cut(s) 175, 370
AvaII GGWCC 2 cut(s) 122, 132
AxyI CCTNAGG 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 125, 257
BccI CCATC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcoDI GTCTC 2 cut(s) 46, 205
BfaI CTAG 1 cut(s) 357
BisI GCNGC 2 cut(s) 114, 271
BlsI GCNGC 2 cut(s) 115, 272
Bme18I GGWCC 2 cut(s) 122, 132
BmgT120I GGNCC 3 cut(s) 122, 132, 227
BmiI GGNNCC 2 cut(s) 124, 134
BmsI GCATC 3 cut(s) 66, 206, 352
BpiI GAAGAC 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 165, 166, 192, 193
Bse118I RCCGGY 1 cut(s) 241
Bse21I CCTNAGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 5 cut(s) 22, 165, 166, 192, 193
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 125, 257
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 120, 242
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 5 cut(s) 22, 165, 166, 192, 193
BsmAI GTCTC 2 cut(s) 46, 205
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 364
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 124, 134
BsrFI RCCGGY 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 206
Bst4CI ACNGT 4 cut(s) 9, 65, 207, 279
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 243, 341
BstDEI CTNAG 2 cut(s) 37, 189
BstDSI CCRYGG 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 376
BstMAI GTCTC 2 cut(s) 46, 205
BstNSI RCATGY 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 125, 257
BstV2I GAAGAC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 243, 341
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 3 cut(s) 122, 132, 227
CviAII CATG 2 cut(s) 238, 310
CviJI RGCY 5 cut(s) 31, 116, 228, 270, 304
CviKI_1 RGCY 5 cut(s) 31, 116, 228, 270, 304
DdeI CTNAG 2 cut(s) 37, 189
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 122, 132
Eco81I CCTNAGG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
FaeI CATG 2 cut(s) 241, 313
FaiI YATR 6 cut(s) 146, 216, 239, 311, 331, 394
FaqI GGGAC 1 cut(s) 108
FatI CATG 2 cut(s) 237, 309
Fnu4HI GCNGC 2 cut(s) 114, 271
Fsp4HI GCNGC 2 cut(s) 114, 271
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 114, 271
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 120, 242
Hin1II CATG 2 cut(s) 241, 313
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 283
HpaII CCGG 2 cut(s) 120, 242
HphI GGTGA 2 cut(s) 175, 370
Hpy166II GTNNAC 2 cut(s) 75, 132
Hpy188I TCNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 75, 132
HpyAV CCTTC 2 cut(s) 159, 218
HpyCH4III ACNGT 4 cut(s) 9, 65, 207, 279
HpyCH4V TGCA 2 cut(s) 4, 203
HpyF3I CTNAG 2 cut(s) 37, 189
Hsp92II CATG 2 cut(s) 241, 313
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
LpnPI CCDG 6 cut(s) 133, 149, 173, 243, 255, 308
Lsp1109I GCAGC 2 cut(s) 125, 257
LweI GCATC 3 cut(s) 66, 206, 352
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 347, 376
MboII GAAGA 2 cut(s) 143, 151
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 1 cut(s) 103
MnlI CCTC 3 cut(s) 26, 44, 165
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 3 cut(s) 252, 306, 384
MspI CCGG 2 cut(s) 120, 242
NaeI GCCGGC 1 cut(s) 243
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 241, 313
NlaIV GGNNCC 2 cut(s) 124, 134
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 115, 272
PspEI GGTNACC 1 cut(s) 376
PspN4I GGNNCC 2 cut(s) 124, 134
PspPI GGNCC 3 cut(s) 122, 132, 227
SaqAI TTAA 3 cut(s) 252, 306, 384
SatI GCNGC 2 cut(s) 114, 271
Sau96I GGNCC 3 cut(s) 122, 132, 227
SduI GDGCHC 1 cut(s) 364
SetI ASST 3 cut(s) 118, 306, 358
SfaNI GCATC 3 cut(s) 66, 206, 352
SinI GGWCC 2 cut(s) 122, 132
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 357
TaaI ACNGT 4 cut(s) 9, 65, 207, 279
TaqI TCGA 1 cut(s) 281
TasI AATT 1 cut(s) 103
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 3 cut(s) 252, 306, 384
Tru9I TTAA 3 cut(s) 252, 306, 384
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 113, 270
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 122, 132
XceI RCATGY 1 cut(s) 241
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.