MD07G1016000.v1.1

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010467
Physical Location & Seq
Forward (+)
1433088 .. 1435727
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1016000.v1.1.491

Sequence Viewer

Length: 447 bp
ATGGCAGCCGTCGGTGGTCCTAAGTGGGCACAGAAGACCATAACTCTGCCTCCCCTCAAGAGGGGTTGTCATCTCGTCACCCCTAAGATAGTGAAGGAAATTGGGGAGGACTTGTCAGAATTCAAGTGTGGCCTTGCCCACCTCTTCTTGCAGCACACAAGTGCTTCTCTTACTATCAATGAGAATTATGACTCTGATGTTCGTCACGATGCAGAGACATTCCTCAATACCATTGTTCCTGAGGGGACCTCTGCACCATGGAAGCATACCCTTGAAGGCCCAGATGACATGCCAGCACATATTAAATCATCAATGTTTGGCTGCACTCTGACGGTTCCAATTACAAATGGAAAACTCAACATGGGAACTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACTATTCTACAGCACGGAAAGTTGTGGTTACCCTGAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

149

Amino Acids

16.3

Weight (kDa)

6.64

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 26 - 144 1.6e-40 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 60, 61
AgsI TTSAA 2 cut(s) 124, 275
AleI CACNNNNGTG 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 2 cut(s) 130, 277
ApeKI GCWGC 3 cut(s) 5, 151, 321
ApoI RAATTY 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 17, 246, 278
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 2 cut(s) 17, 246
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 17, 163, 308
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 3 cut(s) 6, 152, 322
BlsI GCNGC 3 cut(s) 7, 153, 323
Bme18I GGWCC 2 cut(s) 17, 246
BmgT120I GGNCC 3 cut(s) 17, 246, 278
BmiI GGNNCC 2 cut(s) 247, 336
BmsI GCATC 2 cut(s) 199, 403
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 61
Bse21I CCTNAGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 60, 61
BseMII CTCAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 3 cut(s) 17, 163, 308
BsgI GTGCAG 2 cut(s) 237, 307
BshFI GGCC 2 cut(s) 132, 279
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 60, 61
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 2 cut(s) 132, 279
Bsp1286I GDGCHC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 257
BspANI GGCC 2 cut(s) 132, 279
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 247, 336
BssECI CCNNGG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 21, 84, 240
BstDSI CCRYGG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 292
BstPI GGTNACC 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 17, 163, 308
BstV2I GAAGAC 1 cut(s) 41
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 2 cut(s) 132, 279
BtgI CCRYGG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 17, 246, 278
CviAII CATG 3 cut(s) 258, 289, 361
CviJI RGCY 4 cut(s) 8, 132, 279, 321
CviKI_1 RGCY 4 cut(s) 8, 132, 279, 321
DdeI CTNAG 3 cut(s) 21, 84, 240
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 17, 246
Eco81I CCTNAGG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 3 cut(s) 261, 292, 364
FaiI YATR 9 cut(s) 41, 189, 259, 267, 290, 300, 362, 382, 445
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 257, 288, 360
Fnu4HI GCNGC 3 cut(s) 6, 152, 322
Fsp4HI GCNGC 3 cut(s) 6, 152, 322
GluI GCNGC 3 cut(s) 6, 152, 322
HaeIII GGCC 2 cut(s) 132, 279
Hin1II CATG 3 cut(s) 261, 292, 364
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 118, 196, 330
Hpy188III TCNNGA 4 cut(s) 58, 206, 239, 398
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 88, 269
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 4 cut(s) 151, 212, 254, 324
HpyF3I CTNAG 3 cut(s) 21, 84, 240
Hsp92II CATG 3 cut(s) 261, 292, 364
LpnPI CCDG 4 cut(s) 252, 294, 306, 359
Lsp1109I GCAGC 3 cut(s) 17, 163, 308
LweI GCATC 2 cut(s) 199, 403
MaeIII GTNAC 4 cut(s) 76, 203, 398, 427
MboII GAAGA 2 cut(s) 46, 136
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 4 cut(s) 99, 119, 184, 339
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 8 cut(s) 54, 60, 65, 100, 152, 233, 235, 259
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 257
NlaIII CATG 3 cut(s) 261, 292, 364
NlaIV GGNNCC 2 cut(s) 247, 336
NmuCI GTSAC 3 cut(s) 76, 203, 398
NspI RCATGY 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 159
PkrI GCNGC 3 cut(s) 7, 153, 323
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
PspEI GGTNACC 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 247, 336
PspPI GGNCC 3 cut(s) 17, 246, 278
PspPPI RGGWCCY 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 6, 152, 322
Sau96I GGNCC 3 cut(s) 17, 246, 278
SchI GAGTC 1 cut(s) 185
SduI GDGCHC 1 cut(s) 31
SetI ASST 2 cut(s) 144, 251
SfaNI GCATC 2 cut(s) 199, 403
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 2 cut(s) 17, 246
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 99, 119, 184, 339
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 334
TasI AATT 4 cut(s) 99, 119, 184, 339
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 3 cut(s) 76, 203, 398
TseI GCWGC 3 cut(s) 5, 151, 321
Tsp45I GTSAC 3 cut(s) 76, 203, 398
TspGWI ACGGA 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 17, 246
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.