Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010467

Physical Location & Seq

Genomic Coordinates Reverse (-)

204071 .. 211921

Gene Structure 7851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATAGTGAAGGAAATTGGCCAGGAATTGTCAGATTTCAACTGCGGCCTTGCACATCTCTTTTTGCAGCACACTACTGCTTCTCTTACTATCAATGAGAATGTTGACTCTGATGTTCGTGATGATACAGAGACATTCCTCAATAGGATAGTTCCTGAGGGGACATCTGCACCATGGAAGCATACCCTTGAAGGCTCAGATGACATGCCGGGGCATATTAAATCATTAATGTTTGGCTGCACACTGACGGTTCCAATTACAAATGGAAAGCTTAACATGGTACCTTGGCAGGGAATATGGTTGTGTGAGCATTGTGACTATCCTACTGGGCAGAAAGTTGTGGTCACCCTTAATGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0047

Protein Analysis

120

Amino Acids

13.17

Weight (kDa)

4.82

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21065
fragaria_vesca	FvH4_5g26780
malus_domestica	MD06G1057400.v1.1 MD07G1016000.v1.1
prunus_persica	Prupe.5G000700_v2.0.a1 Prupe.5G000800_v2.0.a1
pyrus_communis	pycom06g04830 pycom16g26380
rosa_chinensis	RchiOBHm_Chr7g0217691
rosa_laevigata	RLG00000002448 RLG00000002454
rosa_multiflora	Rmu_sc0000202.1_g000006 Rmu_sc0016034.1_g000001
rosa_rugosa	Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2BG115900 Rh7AG311000 Rh7BG302900 Rh7CG330000 Rh7DG310800
rosa_wichuraiana	Rw7G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	37, 188
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	16, 43
ApeKI	GCWGC	2 cut(s)	64, 234
AseI	ATTAAT	1 cut(s)	224
Asp718I	GGTACC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	76, 221
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	43, 65, 235
BlsI	GCNGC	3 cut(s)	44, 66, 236
Bme1390I	CCNGG	2 cut(s)	20, 207
BmiI	GGNNCC	2 cut(s)	249, 279
BmrFI	CCNGG	2 cut(s)	20, 207
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	170, 206, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	328
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	170, 206, 281
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	144, 207
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	76, 221
BsgI	GTGCAG	2 cut(s)	150, 220
BshFI	GGCC	2 cut(s)	18, 45
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	18, 45
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	18, 45
BspCNI	CTCAG	2 cut(s)	145, 206
BspLI	GGNNCC	2 cut(s)	249, 279
BspT107I	GGYRCC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	170, 206, 281
BssT1I	CCWWGG	2 cut(s)	170, 281
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	153, 193
BstDSI	CCRYGG	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	18, 205
BstV1I	GCAGC	2 cut(s)	76, 221
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	18, 45
BtgI	CCRYGG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	3 cut(s)	171, 202, 274
CviJI	RGCY	5 cut(s)	18, 45, 192, 234, 268
CviKI_1	RGCY	5 cut(s)	18, 45, 192, 234, 268
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	153, 193
EaeI	YGGCCR	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	170, 281
Eco81I	CCTNAGG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	170, 281
ErhI	CCWWGG	2 cut(s)	170, 281
FaeI	CATG	3 cut(s)	174, 205, 277
FaiI	YATR	7 cut(s)	172, 180, 203, 213, 275, 295, 358
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	170, 201, 273
Fnu4HI	GCNGC	3 cut(s)	43, 65, 235
Fsp4HI	GCNGC	3 cut(s)	43, 65, 235
GluI	GCNGC	3 cut(s)	43, 65, 235
HaeIII	GGCC	2 cut(s)	18, 45
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	3 cut(s)	174, 205, 277
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	31, 109, 196
Hpy188III	TCNNGA	2 cut(s)	116, 152
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	50, 64, 167, 237
HpyF3I	CTNAG	2 cut(s)	153, 193
Hsp92II	CATG	3 cut(s)	174, 205, 277
KpnI	GGTACC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	5, 32, 165, 219, 272, 309
Lsp1109I	GCAGC	2 cut(s)	76, 221
MaeIII	GTNAC	2 cut(s)	311, 340
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	3 cut(s)	12, 23, 252
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	146, 148
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	4 cut(s)	216, 224, 270, 348
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	20, 207
MvaI	CCWGG	1 cut(s)	20
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	174, 205, 277
NlaIV	GGNNCC	2 cut(s)	249, 279
NmuCI	GTSAC	2 cut(s)	311, 340
NspI	RCATGY	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	44, 66, 236
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	249, 279
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	216, 224, 270, 348
SatI	GCNGC	3 cut(s)	43, 65, 235
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	20, 207
SetI	ASST	2 cut(s)	270, 283
Sse9I	AATT	3 cut(s)	12, 23, 252
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	18, 205
StyI	CCWWGG	2 cut(s)	170, 281
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	3 cut(s)	12, 23, 252
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	4 cut(s)	216, 224, 270, 348
Tru9I	TTAA	4 cut(s)	216, 224, 270, 348
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	311, 340
TseI	GCWGC	2 cut(s)	64, 234
Tsp45I	GTSAC	2 cut(s)	311, 340
TspRI	CASTG	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	224
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.