RchiOBHm_Chr7g0217691

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010467
Physical Location & Seq
Forward (+)
35608087 .. 35610926
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19482

Sequence Viewer

Length: 555 bp
ATGCAAAGCTCACTGTCGTTCCTCTCTGTGGCGAAGCCCCTCTCAGTCTCATCTCCGGTTCGCATCAAGTGTTCATTGTTCACCGCCCCAAGCACCACCGACCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCCCAGAGAAGAGGCTGCCACCTCATCACCCCTAAGATAATGAAGGAAATCGGGCAGGACTTGTCTGGATTCAACTGCGGACTTGCTCACCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTCTGATGTTCGTACCGATACAGAGACATTCCTTAATAGGATAGTTCCTGAGGGGGCATCTGCACCGTGGAGACATACCCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACGAACCTACCGCTCGGAAAGTTGTGGTCACGCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

184

Amino Acids

20.14

Weight (kDa)

8.32

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 62 - 180 1.8e-41 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 521
AciI CCGC 3 cut(s) 84, 237, 519
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 111, 232, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 3 cut(s) 9, 119, 463
AluI AGCT 3 cut(s) 9, 119, 463
Alw26I GTCTC 3 cut(s) 52, 317, 364
AoxI GGCC 2 cut(s) 135, 385
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 116, 174, 429
AspS9I GGNCC 4 cut(s) 125, 135, 136, 386
AsuHPI GGTGA 3 cut(s) 73, 178, 239
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 128, 161, 416
BcoDI GTCTC 3 cut(s) 52, 317, 364
BisI GCNGC 3 cut(s) 117, 175, 430
BlsI GCNGC 3 cut(s) 118, 176, 431
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 4 cut(s) 125, 135, 136, 386
BmiI GGNNCC 2 cut(s) 127, 137
BmsI GCATC 3 cut(s) 72, 365, 511
BpiI GAAGAC 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 55, 122
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 57, 339
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 3 cut(s) 128, 161, 416
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 137, 387
BsiSI CCGG 3 cut(s) 56, 123, 401
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 3 cut(s) 52, 317, 364
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 137, 387
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 3 cut(s) 84, 237, 519
BspANI GGCC 2 cut(s) 137, 387
BspCNI CTCAG 2 cut(s) 56, 340
BspLI GGNNCC 2 cut(s) 127, 137
BsrBI CCGCTC 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 15, 366, 438
Bst6I CTCTTC 2 cut(s) 163, 257
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 43, 192, 348
BstDSI CCRYGG 1 cut(s) 365
BstMAI GTCTC 3 cut(s) 52, 317, 364
BstNSI RCATGY 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 128, 161, 416
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 137, 387
BtgI CCRYGG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 4 cut(s) 125, 135, 136, 386
Csp6I GTAC 1 cut(s) 312
CviAII CATG 2 cut(s) 397, 469
CviJI RGCY 8 cut(s) 9, 37, 119, 137, 174, 387, 429, 463
CviKI_1 RGCY 8 cut(s) 9, 37, 119, 137, 174, 387, 429, 463
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 43, 192, 348
Eam1104I CTCTTC 2 cut(s) 163, 257
EarI CTCTTC 2 cut(s) 163, 257
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 2 cut(s) 400, 472
FaiI YATR 7 cut(s) 149, 297, 375, 398, 470, 490, 553
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 396, 468
Fnu4HI GCNGC 3 cut(s) 117, 175, 430
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 117, 175, 430
GluI GCNGC 3 cut(s) 117, 175, 430
HaeIII GGCC 2 cut(s) 137, 387
HapII CCGG 3 cut(s) 56, 123, 401
Hin1II CATG 2 cut(s) 400, 472
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 228, 299, 442
HpaII CCGG 3 cut(s) 56, 123, 401
HphI GGTGA 3 cut(s) 73, 178, 239
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 304, 525
Hpy188III TCNNGA 3 cut(s) 225, 347, 506
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 196, 377
HpyCH4III ACNGT 3 cut(s) 15, 366, 438
HpyCH4V TGCA 3 cut(s) 4, 259, 362
HpyF3I CTNAG 3 cut(s) 43, 192, 348
Hsp92II CATG 2 cut(s) 400, 472
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Lsp1109I GCAGC 3 cut(s) 128, 161, 416
LweI GCATC 3 cut(s) 72, 365, 511
MaeIII GTNAC 2 cut(s) 506, 535
MbiI CCGCTC 1 cut(s) 521
MboII GAAGA 3 cut(s) 154, 180, 244
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 7 cut(s) 32, 50, 164, 168, 191, 260, 343
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 4 cut(s) 333, 411, 465, 543
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 3 cut(s) 56, 123, 401
NaeI GCCGGC 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 2 cut(s) 400, 472
NlaIV GGNNCC 2 cut(s) 127, 137
NmuCI GTSAC 2 cut(s) 506, 535
NspI RCATGY 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 267
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 228, 442
PkrI GCNGC 3 cut(s) 118, 176, 431
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 127, 137
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 125, 135, 136, 386
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 4 cut(s) 333, 411, 465, 543
SatI GCNGC 3 cut(s) 117, 175, 430
Sau96I GGNCC 4 cut(s) 125, 135, 136, 386
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 11, 121, 183, 252, 465, 517
SfaNI GCATC 3 cut(s) 72, 365, 511
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 1 cut(s) 106
SsiI CCGC 3 cut(s) 84, 237, 519
TaaI ACNGT 3 cut(s) 15, 366, 438
TaqI TCGA 1 cut(s) 440
TasI AATT 1 cut(s) 106
TfiI GAWTC 2 cut(s) 228, 442
Tru1I TTAA 4 cut(s) 333, 411, 465, 543
Tru9I TTAA 4 cut(s) 333, 411, 465, 543
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 506, 535
TseI GCWGC 3 cut(s) 116, 174, 429
Tsp45I GTSAC 2 cut(s) 506, 535
TspDTI ATGAA 2 cut(s) 63, 215
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.