RLG00000002448

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010467
Physical Location & Seq
Reverse (-)
34353300 .. 34355738
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002448

Sequence Viewer

Length: 402 bp
ATGCAAAGCTCACTGTCGTTCCTCCCTGTGGCGAAGCCCCTCTCAGTCTCATCTCCGGTTCGCATCAACTGTTCATTGTTCACCGCCCCAAGCACCACCGACCCCCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCCCAGAGAAGAGGCTGCCACCTCATCACCCCAAAGGGGGCATCTGCACCGTGGAGACATACCCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACGAACCCACTGCTCGGAAAGTTGTGGTCACCCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

134

Amino Acids

14.4

Weight (kDa)

9.56

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 63 - 129 8.4e-22 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AfiI CCNNNNNNNGG 4 cut(s) 28, 198, 199, 369
AgsI TTSAA 2 cut(s) 114, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 3 cut(s) 9, 122, 310
AluI AGCT 3 cut(s) 9, 122, 310
Alw26I GTCTC 2 cut(s) 52, 211
AoxI GGCC 2 cut(s) 138, 232
ApaI GGGCCC 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 119, 177, 276
AspS9I GGNCC 4 cut(s) 128, 138, 139, 233
AsuHPI GGTGA 3 cut(s) 73, 181, 376
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 131, 164, 263
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BcoDI GTCTC 2 cut(s) 52, 211
BisI GCNGC 3 cut(s) 120, 178, 277
BlsI GCNGC 3 cut(s) 121, 179, 278
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 4 cut(s) 128, 138, 139, 233
BmiI GGNNCC 2 cut(s) 130, 140
BmsI GCATC 3 cut(s) 72, 212, 358
BpiI GAAGAC 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 212
BsaWI WCCGGW 2 cut(s) 55, 125
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 198, 199, 369
Bse118I RCCGGY 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 4 cut(s) 28, 198, 199, 369
BseMII CTCAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 3 cut(s) 131, 164, 263
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 2 cut(s) 140, 234
BsiSI CCGG 3 cut(s) 56, 126, 248
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 4 cut(s) 28, 198, 199, 369
BsmAI GTCTC 2 cut(s) 52, 211
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 140, 234
Bsp120I GGGCCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 140, 234
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 130, 140
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 212
Bst4CI ACNGT 4 cut(s) 15, 71, 213, 285
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 212
BstEII GGTNACC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 52, 211
BstNSI RCATGY 1 cut(s) 247
BstPI GGTNACC 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 131, 164, 263
BstV2I GAAGAC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 140, 234
BtgI CCRYGG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 11, 363
Cac8I GCNNGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 4 cut(s) 128, 138, 139, 233
CviAII CATG 2 cut(s) 244, 316
CviJI RGCY 8 cut(s) 9, 37, 122, 140, 177, 234, 276, 310
CviKI_1 RGCY 8 cut(s) 9, 37, 122, 140, 177, 234, 276, 310
DdeI CTNAG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 128
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 2 cut(s) 247, 319
FaiI YATR 6 cut(s) 152, 222, 245, 317, 337, 400
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 243, 315
Fnu4HI GCNGC 3 cut(s) 120, 178, 277
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 120, 178, 277
GluI GCNGC 3 cut(s) 120, 178, 277
HaeIII GGCC 2 cut(s) 140, 234
HapII CCGG 3 cut(s) 56, 126, 248
Hin1II CATG 2 cut(s) 247, 319
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 289
HpaII CCGG 3 cut(s) 56, 126, 248
HphI GGTGA 3 cut(s) 73, 181, 376
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 4 cut(s) 15, 71, 213, 285
HpyCH4V TGCA 2 cut(s) 4, 209
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 2 cut(s) 247, 319
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
LpnPI CCDG 8 cut(s) 39, 69, 139, 155, 179, 249, 261, 314
Lsp1109I GCAGC 3 cut(s) 131, 164, 263
LweI GCATC 3 cut(s) 72, 212, 358
MaeIII GTNAC 2 cut(s) 353, 382
MboII GAAGA 2 cut(s) 157, 183
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 109
MnlI CCTC 5 cut(s) 32, 50, 167, 171, 194
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 3 cut(s) 258, 312, 390
MspI CCGG 3 cut(s) 56, 126, 248
NaeI GCCGGC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 247, 319
NlaIV GGNNCC 2 cut(s) 130, 140
NmuCI GTSAC 2 cut(s) 353, 382
NspI RCATGY 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 121, 179, 278
PspEI GGTNACC 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 130, 140
PspOMI GGGCCC 1 cut(s) 138
PspPI GGNCC 4 cut(s) 128, 138, 139, 233
SaqAI TTAA 3 cut(s) 258, 312, 390
SatI GCNGC 3 cut(s) 120, 178, 277
Sau96I GGNCC 4 cut(s) 128, 138, 139, 233
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 11, 124, 186, 312
SfaNI GCATC 3 cut(s) 72, 212, 358
SinI GGWCC 1 cut(s) 128
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 84
TaaI ACNGT 4 cut(s) 15, 71, 213, 285
TaqI TCGA 1 cut(s) 287
TasI AATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 3 cut(s) 258, 312, 390
Tru9I TTAA 3 cut(s) 258, 312, 390
TscAI CASTG 2 cut(s) 18, 370
TseFI GTSAC 2 cut(s) 353, 382
TseI GCWGC 3 cut(s) 119, 177, 276
Tsp45I GTSAC 2 cut(s) 353, 382
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 2 cut(s) 18, 370
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.