Prupe.5G000800_v2.0.a1

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010467
Physical Location & Seq
Reverse (-)
233907 .. 236449
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G000800.1

Sequence Viewer

Length: 549 bp
ATGCTGCCGAGCTCGGTGTCATTGGGACTGTCAGCTTCTCCGGTTCGCGTCGTCAAGTGTTCTTTGGTCAGGGCCCCGAGCACCACCGTCAACGATCCCAATTCAATGGCAGCAGCTGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCGCAGAGGAGGGGTTGTCATCTCATCACCCCTAAGATAGTGAAGGAAATTGGCCAGGAATTGTCAGATTTCAACTGCGGCCTTGCACATCTCTTTTTGCAGCACACTAGTGCTTCTCTTACTATCAATGAGAATTATGACTCTGATGTTCGTGATGATACAGAGACTTTCCTCAATAGGATAGTTCCTGAGGGGACATCTGCACCATGGAAGCATACCCTTGAAGGCCCAGATGACATGCCGGCACATATTAAATCATCAATGTTTGGCTGCACACTGACGGTTCCAATTACAAATGGAAAGCTTAACATGGGAAGTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACTATCCTACTGCGCGGAAAGTTGTGGTCACCCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

183

Amino Acids

19.86

Weight (kDa)

7.69

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 48, 517
AciI CCGC 3 cut(s) 155, 231, 517
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 205
AgsI TTSAA 3 cut(s) 105, 226, 377
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 4 cut(s) 12, 35, 116, 457
AluI AGCT 4 cut(s) 12, 35, 116, 457
Alw21I GWGCWC 2 cut(s) 14, 83
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 5 cut(s) 72, 129, 205, 232, 379
ApaI GGGCCC 2 cut(s) 76, 133
ApeKI GCWGC 5 cut(s) 4, 110, 113, 253, 423
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 6 cut(s) 72, 73, 119, 129, 130, 380
AsuHPI GGTGA 2 cut(s) 172, 523
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 2 cut(s) 76, 133
BalI TGGCCA 1 cut(s) 207
BanII GRGCYC 3 cut(s) 14, 76, 133
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 14, 83
BbvI GCAGC 4 cut(s) 122, 125, 265, 410
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 1 cut(s) 261
BisI GCNGC 6 cut(s) 5, 111, 114, 232, 254, 424
BlsI GCNGC 6 cut(s) 6, 112, 115, 233, 255, 425
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 6 cut(s) 72, 73, 119, 129, 130, 380
BmiI GGNNCC 5 cut(s) 74, 75, 121, 131, 438
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 136, 154, 166, 184
Bse118I RCCGGY 1 cut(s) 394
Bse21I CCTNAGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 175
BseSI GKGCMC 2 cut(s) 76, 133
BseXI GCAGC 4 cut(s) 122, 125, 265, 410
BsgI GTGCAG 2 cut(s) 339, 409
Bsh1236I CGCG 2 cut(s) 48, 517
BshFI GGCC 5 cut(s) 74, 131, 207, 234, 381
BsiHKAI GWGCWC 2 cut(s) 14, 83
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 41, 395
BslFI GGGAC 3 cut(s) 39, 105, 361
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 3 cut(s) 39, 105, 361
BsnI GGCC 5 cut(s) 74, 131, 207, 234, 381
BsoBI CYCGRG 1 cut(s) 76
Bsp120I GGGCCC 2 cut(s) 72, 129
Bsp1286I GDGCHC 4 cut(s) 14, 76, 83, 133
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 3 cut(s) 155, 231, 517
BspANI GGCC 5 cut(s) 74, 131, 207, 234, 381
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 2 cut(s) 48, 517
BspLI GGNNCC 5 cut(s) 74, 75, 121, 131, 438
BspPI GGATC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 30, 88, 436
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 186, 342
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 529
BstFNI CGCG 2 cut(s) 48, 517
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 2 cut(s) 76, 133
BstUI CGCG 2 cut(s) 48, 517
BstV1I GCAGC 4 cut(s) 122, 125, 265, 410
BstV2I GAAGAC 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 5 cut(s) 74, 131, 207, 234, 381
BtgI CCRYGG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 396
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 6 cut(s) 72, 73, 119, 129, 130, 380
CseI GACGC 1 cut(s) 37
CviAII CATG 3 cut(s) 360, 391, 463
DdeI CTNAG 2 cut(s) 186, 342
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 3 cut(s) 14, 76, 133
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 72, 73
EcoO65I GGTNACC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 3 cut(s) 14, 76, 133
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 363, 394, 466
FaiI YATR 9 cut(s) 143, 291, 361, 369, 392, 402, 464, 484, 547
FaqI GGGAC 3 cut(s) 39, 105, 361
FatI CATG 3 cut(s) 359, 390, 462
Fnu4HI GCNGC 6 cut(s) 5, 111, 114, 232, 254, 424
FriOI GRGCYC 3 cut(s) 14, 76, 133
Fsp4HI GCNGC 6 cut(s) 5, 111, 114, 232, 254, 424
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 516
GluI GCNGC 6 cut(s) 5, 111, 114, 232, 254, 424
HaeIII GGCC 5 cut(s) 74, 131, 207, 234, 381
HapII CCGG 2 cut(s) 41, 395
HgaI GACGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 517
Hin1II CATG 3 cut(s) 363, 394, 466
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 41, 395
HphI GGTGA 2 cut(s) 172, 523
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 220, 298
Hpy188III TCNNGA 3 cut(s) 305, 341, 500
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 190, 371
HpyCH4III ACNGT 3 cut(s) 30, 88, 436
HpyCH4V TGCA 4 cut(s) 239, 253, 356, 426
HpyF3I CTNAG 2 cut(s) 186, 342
Hsp92II CATG 3 cut(s) 363, 394, 466
HspAI GCGC 1 cut(s) 515
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 94
Lsp1109I GCAGC 4 cut(s) 122, 125, 265, 410
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 500, 529
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 4 cut(s) 14, 76, 83, 133
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 5 cut(s) 100, 201, 212, 286, 441
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 5 cut(s) 153, 156, 162, 335, 337
Mox20I TGGCCA 1 cut(s) 207
MroNI GCCGGC 1 cut(s) 394
MscI TGGCCA 1 cut(s) 207
MseI TTAA 3 cut(s) 405, 459, 537
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 2 cut(s) 41, 395
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 2 cut(s) 48, 517
NaeI GCCGGC 1 cut(s) 396
NcoI CCATGG 1 cut(s) 359
NdeII GATC 1 cut(s) 94
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 363, 394, 466
NlaIV GGNNCC 5 cut(s) 74, 75, 121, 131, 438
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 500, 529
NspI RCATGY 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 396
PkrI GCNGC 6 cut(s) 6, 112, 115, 233, 255, 425
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 207
PspEI GGTNACC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 5 cut(s) 74, 75, 121, 131, 438
PspOMI GGGCCC 2 cut(s) 72, 129
PspPI GGNCC 6 cut(s) 72, 73, 119, 129, 130, 380
PstNI CAGNNNCTG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 405, 459, 537
SatI GCNGC 6 cut(s) 5, 111, 114, 232, 254, 424
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 6 cut(s) 72, 73, 119, 129, 130, 380
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 4 cut(s) 14, 76, 83, 133
SetI ASST 4 cut(s) 14, 37, 118, 459
SfaNI GCATC 1 cut(s) 505
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 5 cut(s) 100, 201, 212, 286, 441
SsiI CCGC 3 cut(s) 155, 231, 517
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 3 cut(s) 30, 88, 436
TasI AATT 5 cut(s) 100, 201, 212, 286, 441
TauI GCSGC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 405, 459, 537
Tru9I TTAA 3 cut(s) 405, 459, 537
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 500, 529
TseI GCWGC 5 cut(s) 4, 110, 113, 253, 423
Tsp45I GTSAC 2 cut(s) 500, 529
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 119
XceI RCATGY 1 cut(s) 394
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.