Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010467

Physical Location & Seq

Genomic Coordinates Reverse (-)

6458673 .. 6460570

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATAGCCGCCGGTGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCTCTGAAGAGGGGTTGTCATCTCGTCACGCCCAAGATAGTGAAGGAAATTGGGGAGGACTTGTCAGAATTCAACTGTGGCCTTGCCCATCTCTTCTTGCAGCACACAAGTGCTTCTCTTACTATCAACGAGAATTACGACTCTGATGTTCGTGACGATACAGAGACATTCCTCAATACCATTGTTCCTGAGGGGACCTCTGCACCGTGGAAGCATACCCTTGAAGGACCAGATGACATGCCAGCGCATATTAAATCATCCATGTTTGGCTGCACACTGATGGTTCCAATTACAAATGGAAAGCTTAACATGGGAACTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACTATCCTACAGCACGGAAAGTTGTGGTTACCCTTAATGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0047

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

6.03

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21065
fragaria_vesca	FvH4_5g26780
malus_domestica	MD06G1057400.v1.1 MD07G1016000.v1.1
prunus_persica	Prupe.5G000700_v2.0.a1 Prupe.5G000800_v2.0.a1
pyrus_communis	pycom06g04830 pycom16g26380
rosa_chinensis	RchiOBHm_Chr7g0217691
rosa_laevigata	RLG00000002448 RLG00000002454
rosa_multiflora	Rmu_sc0000202.1_g000006 Rmu_sc0016034.1_g000001
rosa_rugosa	Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2BG115900 Rh7AG311000 Rh7BG302900 Rh7CG330000 Rh7DG310800
rosa_wichuraiana	Rw7G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	124, 275
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	27, 130
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	151, 321
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	5 cut(s)	17, 27, 28, 246, 278
AvaII	GGWCC	3 cut(s)	17, 246, 278
AxyI	CCTNAGG	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	163, 308
BccI	CCATC	2 cut(s)	147, 325
BcoDI	GTCTC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	9, 152, 322
BlsI	GCNGC	3 cut(s)	10, 153, 323
Bme18I	GGWCC	3 cut(s)	17, 246, 278
BmgT120I	GGNCC	5 cut(s)	17, 27, 28, 246, 278
BmiI	GGNNCC	4 cut(s)	19, 29, 247, 336
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 98, 128
Bse118I	RCCGGY	1 cut(s)	11
Bse21I	CCTNAGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	163, 308
BsgI	GTGCAG	2 cut(s)	237, 307
BshFI	GGCC	2 cut(s)	29, 132
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	3, 259
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	3, 259
BsnI	GGCC	2 cut(s)	29, 132
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	29, 132
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	19, 29, 247, 336
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	128, 258
Bst6I	CTCTTC	2 cut(s)	53, 149
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	257
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	163, 308
BstV2I	GAAGAC	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	29, 132
BtgI	CCRYGG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	5 cut(s)	17, 27, 28, 246, 278
CviAII	CATG	3 cut(s)	289, 313, 361
CviJI	RGCY	5 cut(s)	8, 29, 132, 321, 355
CviKI_1	RGCY	5 cut(s)	8, 29, 132, 321, 355
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	53, 149
EarI	CTCTTC	2 cut(s)	53, 149
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	17, 246, 278
Eco57I	CTGAAG	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	292, 316, 364
FaiI	YATR	8 cut(s)	41, 267, 290, 300, 314, 362, 382, 445
FaqI	GGGAC	2 cut(s)	3, 259
FatI	CATG	3 cut(s)	288, 312, 360
Fnu4HI	GCNGC	3 cut(s)	9, 152, 322
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	9, 152, 322
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	9, 152, 322
HaeIII	GGCC	2 cut(s)	29, 132
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	292, 316, 364
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	57, 118, 196
Hpy188III	TCNNGA	3 cut(s)	203, 239, 398
HpyAV	CCTTC	2 cut(s)	88, 269
HpyCH4III	ACNGT	2 cut(s)	128, 258
HpyCH4V	TGCA	3 cut(s)	151, 254, 324
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	292, 316, 364
HspAI	GCGC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	25, 44, 252, 294, 306, 359
Lsp1109I	GCAGC	2 cut(s)	163, 308
LweI	GCATC	1 cut(s)	403
MaeIII	GTNAC	4 cut(s)	76, 203, 398, 427
MboII	GAAGA	3 cut(s)	46, 70, 136
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	99, 119, 184, 339
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	54, 60, 63, 100, 233, 235, 259
MseI	TTAA	3 cut(s)	303, 357, 435
MslI	CAYNNNNRTG	2 cut(s)	159, 329
MspI	CCGG	1 cut(s)	12
NlaIII	CATG	3 cut(s)	292, 316, 364
NlaIV	GGNNCC	4 cut(s)	19, 29, 247, 336
NmuCI	GTSAC	3 cut(s)	76, 203, 398
NspI	RCATGY	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	10, 153, 323
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	427
PspN4I	GGNNCC	4 cut(s)	19, 29, 247, 336
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	5 cut(s)	17, 27, 28, 246, 278
PspPPI	RGGWCCY	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	159, 329
SaqAI	TTAA	3 cut(s)	303, 357, 435
SatI	GCNGC	3 cut(s)	9, 152, 322
Sau96I	GGNCC	5 cut(s)	17, 27, 28, 246, 278
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	2 cut(s)	251, 357
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	408
SgrAI	CRCCGGYG	1 cut(s)	11
SinI	GGWCC	3 cut(s)	17, 246, 278
SmiMI	CAYNNNNRTG	2 cut(s)	159, 329
Sse9I	AATT	4 cut(s)	99, 119, 184, 339
SsiI	CCGC	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	128, 258
TasI	AATT	4 cut(s)	99, 119, 184, 339
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	303, 357, 435
Tru9I	TTAA	3 cut(s)	303, 357, 435
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	3 cut(s)	76, 203, 398
TseI	GCWGC	2 cut(s)	151, 321
Tsp45I	GTSAC	3 cut(s)	76, 203, 398
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	3 cut(s)	17, 246, 278
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.