FvH4_5g26780

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010467
Physical Location & Seq
Forward (+)
18170780 .. 18173298
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26780.t1

Sequence Viewer

Length: 552 bp
ATGCAAACCTCACTCTCTTTCCTCTCTGCGGCGAGGCCCCTCTCACTCTCTTCTCCGCTTCGCATCAACTCTTCCTTGGTCACCGCTCCGACCACCGACCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGGCCCAGAAGACCATAACTCTTCCTCCCCAGACAAGAGGTTGCCACCTCATCACCCCTCAGATAATGAATGGAATCAGGCAGGACTTGTCTGGATTCAACTGTGGTCTTGCCCATCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTGTGATGTTCGTACTGATACCGAGACATTCCTCAATAGGATAGTTCCTGAGGGGAACTCTGCACCATGGAGACATACACTTGAAGGTCCAGATGACATGCCAGCACACATTAAATCATCAATGTTTGGTTGCCAACTGTCGATTCCAATCACAAATGGAAAGCTGAACATGGGAACCTGGCAGGGAATATGGTTGTGTGAGCATCGTGATGAACCCACTGCTCGGAAAGTTGTGGTCACCCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

184

Amino Acids

20.04

Weight (kDa)

7.0

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 61 - 179 4.3e-41 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 3 cut(s) 29, 56, 84
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 28, 519
AgsI TTSAA 3 cut(s) 108, 229, 380
AjnI CCWGG 1 cut(s) 473
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 2 cut(s) 116, 460
AluI AGCT 2 cut(s) 116, 460
Alw26I GTCTC 2 cut(s) 314, 361
AoxI GGCC 2 cut(s) 35, 132
ApaI GGGCCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 113
AspS9I GGNCC 5 cut(s) 36, 122, 132, 133, 383
AsuHPI GGTGA 3 cut(s) 73, 175, 526
AvaII GGWCC 2 cut(s) 122, 383
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 314, 361
BisI GCNGC 2 cut(s) 30, 114
BlsI GCNGC 2 cut(s) 31, 115
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 2 cut(s) 122, 383
BmgT120I GGNCC 5 cut(s) 36, 122, 132, 133, 383
BmiI GGNNCC 4 cut(s) 38, 124, 134, 472
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 72, 508
BpiI GAAGAC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 75, 362
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 519
Bse21I CCTNAGG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 75, 362
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 28, 519
BseMII CTCAG 2 cut(s) 203, 336
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 37, 134
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 28, 519
BsmAI GTCTC 2 cut(s) 314, 361
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 37, 134
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 3 cut(s) 29, 56, 84
BspANI GGCC 2 cut(s) 37, 134
BspCNI CTCAG 2 cut(s) 202, 337
BspLI GGNNCC 4 cut(s) 38, 124, 134, 472
BsrBI CCGCTC 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 75, 362
BssT1I CCWWGG 2 cut(s) 75, 362
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 3 cut(s) 233, 299, 435
Bst6I CTCTTC 4 cut(s) 55, 76, 156, 254
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 189, 345
BstDSI CCRYGG 1 cut(s) 362
BstEII GGTNACC 2 cut(s) 79, 532
BstMAI GTCTC 2 cut(s) 314, 361
BstNI CCWGG 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 2 cut(s) 79, 532
BstSCI CCNGG 1 cut(s) 473
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 2 cut(s) 37, 134
BtgI CCRYGG 1 cut(s) 362
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 5 cut(s) 36, 122, 132, 133, 383
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 363, 394, 466
CviJI RGCY 4 cut(s) 37, 116, 134, 460
CviKI_1 RGCY 4 cut(s) 37, 116, 134, 460
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 189, 345
Eam1104I CTCTTC 4 cut(s) 55, 76, 156, 254
EarI CTCTTC 4 cut(s) 55, 76, 156, 254
Eco130I CCWWGG 2 cut(s) 75, 362
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 122, 383
Eco81I CCTNAGG 1 cut(s) 345
Eco91I GGTNACC 2 cut(s) 79, 532
EcoO109I RGGNCCY 1 cut(s) 36
EcoO65I GGTNACC 2 cut(s) 79, 532
EcoRII CCWGG 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 75, 362
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 75, 362
FaeI CATG 3 cut(s) 366, 397, 469
FaiI YATR 8 cut(s) 146, 294, 364, 372, 395, 467, 487, 550
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 362, 393, 465
Fnu4HI GCNGC 2 cut(s) 30, 114
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 30, 114
GluI GCNGC 2 cut(s) 30, 114
HaeIII GGCC 2 cut(s) 37, 134
HapII CCGG 1 cut(s) 120
Hin1II CATG 3 cut(s) 366, 397, 469
HinfI GANTC 3 cut(s) 204, 225, 439
HpaII CCGG 1 cut(s) 120
HphI GGTGA 3 cut(s) 73, 175, 526
Hpy188I TCNGA 3 cut(s) 90, 192, 522
Hpy188III TCNNGA 4 cut(s) 222, 344, 386, 503
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 3 cut(s) 233, 299, 435
HpyCH4V TGCA 3 cut(s) 4, 256, 359
HpyF3I CTNAG 2 cut(s) 189, 345
Hsp92II CATG 3 cut(s) 366, 397, 469
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 72, 508
MaeIII GTNAC 2 cut(s) 79, 532
MbiI CCGCTC 1 cut(s) 86
MboII GAAGA 5 cut(s) 42, 63, 143, 151, 241
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 113
MseI TTAA 2 cut(s) 408, 540
MslI CAYNNNNRTG 2 cut(s) 264, 504
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 475
MvaI CCWGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 362
NlaIII CATG 3 cut(s) 366, 397, 469
NlaIV GGNNCC 4 cut(s) 38, 124, 134, 472
NmuCI GTSAC 2 cut(s) 79, 532
NspI RCATGY 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 264
PfeI GAWTC 3 cut(s) 204, 225, 439
PkrI GCNGC 2 cut(s) 31, 115
Psp6I CCWGG 1 cut(s) 473
PspEI GGTNACC 2 cut(s) 79, 532
PspGI CCWGG 1 cut(s) 473
PspN4I GGNNCC 4 cut(s) 38, 124, 134, 472
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 5 cut(s) 36, 122, 132, 133, 383
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 264, 504
SaqAI TTAA 2 cut(s) 408, 540
SatI GCNGC 2 cut(s) 30, 114
Sau96I GGNCC 5 cut(s) 36, 122, 132, 133, 383
ScrFI CCNGG 1 cut(s) 475
SduI GDGCHC 1 cut(s) 136
SetI ASST 7 cut(s) 11, 118, 172, 180, 385, 462, 476
SfaNI GCATC 2 cut(s) 72, 508
SinI GGWCC 2 cut(s) 122, 383
SmiMI CAYNNNNRTG 2 cut(s) 264, 504
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 29, 56, 84
StyD4I CCNGG 1 cut(s) 473
StyI CCWWGG 2 cut(s) 75, 362
TaaI ACNGT 3 cut(s) 233, 299, 435
TaqI TCGA 1 cut(s) 437
TasI AATT 1 cut(s) 103
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 204, 225, 439
Tru1I TTAA 2 cut(s) 408, 540
Tru9I TTAA 2 cut(s) 408, 540
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 2 cut(s) 79, 532
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 79, 532
TspDTI ATGAA 2 cut(s) 212, 522
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 122, 383
XceI RCATGY 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.