Rh7DG310800

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010467
Physical Location & Seq
Forward (+)
36366501 .. 36425257
58757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG310800.1

Sequence Viewer

Length: 369 bp
ATGAAGGAAATCGGGCAGGACTTGTCTGGATTCAACTGTGGACTTGCTCACCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTCTGATGTTCGTACCGACACAGAGACATTCCTCAATAGGGTAGTTCCTGAGGGGGCATCTGCACCTTGGAGACATACCCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGTATGTGAAACCACTTATTTAAACTACAGTAGTTTTCTACTTGTTAAGAGCTGCATTTCTCCACCTTGTTATCATCATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

5.54

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 8 - 95 5.3e-33 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 34, 185
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AleI CACNNNNGTG 1 cut(s) 69
AluBI AGCT 2 cut(s) 265, 336
AluI AGCT 2 cut(s) 265, 336
Alw26I GTCTC 2 cut(s) 119, 166
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 231, 336
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 150
BbvI GCAGC 2 cut(s) 218, 323
BcoDI GTCTC 2 cut(s) 119, 166
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 2 cut(s) 232, 337
BlsI GCNGC 2 cut(s) 233, 338
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 218, 323
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 119, 166
BsnI GGCC 1 cut(s) 189
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 38, 240, 314
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 150, 366
BstMAI GTCTC 2 cut(s) 119, 166
BstNSI RCATGY 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 218, 323
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 189
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 199, 271
CviJI RGCY 4 cut(s) 189, 231, 265, 336
CviKI_1 RGCY 4 cut(s) 189, 231, 265, 336
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 150, 366
DraI TTTAAA 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 202, 274
FaiI YATR 6 cut(s) 99, 177, 200, 272, 289, 363
FatI CATG 2 cut(s) 198, 270
Fnu4HI GCNGC 2 cut(s) 232, 337
Fsp4HI GCNGC 2 cut(s) 232, 337
GluI GCNGC 2 cut(s) 232, 337
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 202, 274
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 30, 101, 244
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 27, 149
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 38, 240, 314
HpyCH4V TGCA 3 cut(s) 61, 164, 339
HpyF3I CTNAG 2 cut(s) 150, 366
Hsp92II CATG 2 cut(s) 202, 274
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 2, 12, 162, 204, 216, 269
Lsp1109I GCAGC 2 cut(s) 218, 323
LweI GCATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 46
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 3 cut(s) 62, 143, 145
MroNI GCCGGC 1 cut(s) 202
MseI TTAA 4 cut(s) 213, 267, 305, 330
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 1 cut(s) 203
NaeI GCCGGC 1 cut(s) 204
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 202, 274
NspI RCATGY 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 30, 244
PkrI GCNGC 2 cut(s) 233, 338
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 213, 267, 305, 330
SatI GCNGC 2 cut(s) 232, 337
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 95
SetI ASST 6 cut(s) 54, 169, 267, 288, 338, 352
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 38, 240, 314
TaqI TCGA 1 cut(s) 242
TfiI GAWTC 2 cut(s) 30, 244
Tru1I TTAA 4 cut(s) 213, 267, 305, 330
Tru9I TTAA 4 cut(s) 213, 267, 305, 330
TseI GCWGC 2 cut(s) 231, 336
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.