MD06G1057400.v1.1

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010467
Physical Location & Seq
Reverse (-)
8785467 .. 8787875
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1057400.v1.1.491

Sequence Viewer

Length: 639 bp
ATGTGCGGCAGATATGAAATCAAAGACCTGCTTTTTAAGATTTTATTGGTTCTAATTATTCTACTGCCAATAGCAATTAAAATGCAAATGCAGTGCTGCTCGGTATCAGTGCCAGTAAAGTGTTGTTTGGTGAGGACGCCGAGTACGAGTCCGAGTAGCAGAGGCGGAGGCACCGCCGTCGATTCAATTCCAATGATAGCCGCCGGTGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCTCTGAAGAGGGGTTGTCATCTTGTCACCCCCAAGATAGTGAAGGAAATTGGGGAGGACTTGTCAGAATTCAACTGTGGCCTTGCCCATCTCTTCTTGCAGCACACAAGTGCTTCTCTTACTATCAATGAGAATTACGACTCTGATGTTCGTGACGATACAGAGACATTCCTCAACACCATTGTTCCTGAGGGGACCTCTGCACCGTGGAAGCATACCCTTGAAGGACCAGATGACATGCCAGCGCATATTAAATCATCCATGTTTGGCTGCACACTGATGGTTCCAATTACCAATGGAAAGCTTAACATGGGAACTTGGCAGGGAATATGGTTGTGTGAGCATCGTGACTATCCTACAGCACGGAAAGTTGTGGTTACCCTTAATGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

213

Amino Acids

23.22

Weight (kDa)

7.56

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 90 - 208 1.9e-39 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 4 cut(s) 6, 165, 174, 201
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 3 cut(s) 186, 316, 467
AleI CACNNNNGTG 1 cut(s) 351
AluBI AGCT 1 cut(s) 547
AluI AGCT 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 401
AoxI GGCC 2 cut(s) 219, 322
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 96, 343, 513
ApoI RAATTY 1 cut(s) 311
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 5 cut(s) 209, 219, 220, 438, 470
AsuHPI GGTGA 2 cut(s) 142, 262
AvaII GGWCC 3 cut(s) 209, 438, 470
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 83, 355, 500
BccI CCATC 2 cut(s) 339, 517
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 5 cut(s) 7, 97, 201, 344, 514
BlsI GCNGC 5 cut(s) 8, 98, 202, 345, 515
Bme18I GGWCC 3 cut(s) 209, 438, 470
BmgT120I GGNCC 5 cut(s) 209, 219, 220, 438, 470
BmiI GGNNCC 5 cut(s) 172, 211, 221, 439, 528
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 449
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 290, 320
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 113
Bse21I CCTNAGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 83, 355, 500
BsgI GTGCAG 2 cut(s) 429, 499
BshFI GGCC 2 cut(s) 221, 324
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 195, 451
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 195, 451
BsnI GGCC 2 cut(s) 221, 324
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 223
BspACI CCGC 4 cut(s) 6, 165, 174, 201
BspANI GGCC 2 cut(s) 221, 324
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 5 cut(s) 172, 211, 221, 439, 528
BspMI ACCTGC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 449
BssNI GRCGYC 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 320, 450
Bst6I CTCTTC 2 cut(s) 245, 341
BstACI GRCGYC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 490
BstMAI GTCTC 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 3 cut(s) 83, 355, 500
BstV2I GAAGAC 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 2 cut(s) 221, 324
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 3 cut(s) 98, 114, 518
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 209, 219, 220, 438, 470
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 144
CviAII CATG 3 cut(s) 481, 505, 553
CviJI RGCY 5 cut(s) 200, 221, 324, 513, 547
CviKI_1 RGCY 5 cut(s) 200, 221, 324, 513, 547
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 245, 341
EarI CTCTTC 2 cut(s) 245, 341
EciI GGCGGA 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 3 cut(s) 209, 438, 470
Eco57I CTGAAG 1 cut(s) 269
Eco81I CCTNAGG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 438
EcoO65I GGTNACC 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 3 cut(s) 484, 508, 556
FaiI YATR 9 cut(s) 15, 233, 459, 482, 492, 506, 554, 574, 637
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 2 cut(s) 195, 451
FatI CATG 3 cut(s) 480, 504, 552
Fnu4HI GCNGC 5 cut(s) 7, 97, 201, 344, 514
FokI GGATG 1 cut(s) 487
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 5 cut(s) 7, 97, 201, 344, 514
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 7, 97, 201, 344, 514
HaeIII GGCC 2 cut(s) 221, 324
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 3 cut(s) 484, 508, 556
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 3 cut(s) 148, 182, 383
HpaII CCGG 1 cut(s) 204
HphI GGTGA 2 cut(s) 142, 262
Hpy188I TCNGA 4 cut(s) 153, 249, 310, 388
Hpy188III TCNNGA 3 cut(s) 395, 431, 590
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 280, 461
HpyCH4III ACNGT 2 cut(s) 320, 450
HpyCH4V TGCA 5 cut(s) 85, 91, 343, 446, 516
HpyF3I CTNAG 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 484, 508, 556
HspAI GCGC 1 cut(s) 488
LpnPI CCDG 8 cut(s) 41, 126, 217, 236, 444, 486, 498, 551
Lsp1109I GCAGC 3 cut(s) 83, 355, 500
LweI GCATC 1 cut(s) 595
MaeIII GTNAC 4 cut(s) 268, 395, 590, 619
MboII GAAGA 3 cut(s) 238, 262, 328
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 7 cut(s) 54, 75, 186, 291, 311, 376, 531
MlyI GAGTC 2 cut(s) 157, 377
MseI TTAA 5 cut(s) 36, 78, 495, 549, 627
MslI CAYNNNNRTG 2 cut(s) 351, 521
MspI CCGG 1 cut(s) 204
NlaIII CATG 3 cut(s) 484, 508, 556
NlaIV GGNNCC 5 cut(s) 172, 211, 221, 439, 528
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 3 cut(s) 268, 395, 590
NspI RCATGY 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 8, 98, 202, 345, 515
PleI GAGTC 2 cut(s) 156, 377
PpsI GAGTC 2 cut(s) 156, 377
PpuMI RGGWCCY 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 438
PspEI GGTNACC 1 cut(s) 619
PspN4I GGNNCC 5 cut(s) 172, 211, 221, 439, 528
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 5 cut(s) 209, 219, 220, 438, 470
PspPPI RGGWCCY 1 cut(s) 438
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 2 cut(s) 351, 521
SaqAI TTAA 5 cut(s) 36, 78, 495, 549, 627
SatI GCNGC 5 cut(s) 7, 97, 201, 344, 514
Sau96I GGNCC 5 cut(s) 209, 219, 220, 438, 470
SchI GAGTC 2 cut(s) 157, 377
SduI GDGCHC 1 cut(s) 223
SetI ASST 3 cut(s) 30, 443, 549
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 600
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 3 cut(s) 209, 438, 470
SmiMI CAYNNNNRTG 2 cut(s) 351, 521
Sse9I AATT 7 cut(s) 54, 75, 186, 291, 311, 376, 531
SsiI CCGC 4 cut(s) 6, 165, 174, 201
TaaI ACNGT 2 cut(s) 320, 450
TaqI TCGA 1 cut(s) 180
TasI AATT 7 cut(s) 54, 75, 186, 291, 311, 376, 531
TauI GCSGC 2 cut(s) 9, 203
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 5 cut(s) 36, 78, 495, 549, 627
Tru9I TTAA 5 cut(s) 36, 78, 495, 549, 627
TscAI CASTG 3 cut(s) 98, 114, 525
TseFI GTSAC 3 cut(s) 268, 395, 590
TseI GCWGC 3 cut(s) 96, 343, 513
Tsp45I GTSAC 3 cut(s) 268, 395, 590
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 3 cut(s) 98, 114, 525
VpaK11BI GGWCC 3 cut(s) 209, 438, 470
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.