Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010467

Physical Location & Seq

Genomic Coordinates Forward (+)

28782710 .. 28784680

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g26380.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAAATGCAACGCTCACTCGGTGCGAGTCTGAATCCGAGTAGAAGAGGCAGAGGCACCGCTGTCGATTCACTTCCAATGGCAGCCGCCGGTGGTCCTAAGTGGGCCCAGAAGACCATAACTCTGCCTCCCTTCAAGAGGGGTTGTCATCTCGTTACCCCTAAGATAGTGAAGGAAATTGGGGAGGACTTGTCAGACTTCAAGTGTGGCCTTGCCCATCTCTTCTTGCAGCACACAAGTGCTTCTCTTACTATCAATGAGAATTATGACTCTGATGTTCGTCACGATGCAGAGACATTCCTCAATACCATTGTTCCTGAGGGGACCTCTGCACCATGGAAGCATACCCTTGAAGGCCCAGATGACATGCCAGCACATATTAAATCATCAATGTTTGGCTGCACACTGACGGTTCCAATTACAAATGGAAAACTCAACATGGGAACATGGCAGGGAATATGGTTGTGTGAGCATCGTGACCATTCTACAGCACGGAAAGTTGTGGTTACCCTGAATGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1 UPF0047

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

8.4

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21065
fragaria_vesca	FvH4_5g26780
malus_domestica	MD06G1057400.v1.1 MD07G1016000.v1.1
prunus_persica	Prupe.5G000700_v2.0.a1 Prupe.5G000800_v2.0.a1
pyrus_communis	pycom06g04830 pycom16g26380
rosa_chinensis	RchiOBHm_Chr7g0217691
rosa_laevigata	RLG00000002448 RLG00000002454
rosa_multiflora	Rmu_sc0000202.1_g000006 Rmu_sc0016034.1_g000001
rosa_rugosa	Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2BG115900 Rh7AG311000 Rh7BG302900 Rh7CG330000 Rh7DG310800
rosa_wichuraiana	Rw7G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	2 cut(s)	60, 87
AdeI	CACNNNGTG	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	136, 202, 353
AleI	CACNNNNGTG	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	3 cut(s)	105, 208, 355
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	83, 229, 399
AspS9I	GGNCC	5 cut(s)	95, 105, 106, 324, 356
AvaII	GGWCC	2 cut(s)	95, 324
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	95, 241, 386
BccI	CCATC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BcoDI	GTCTC	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	4 cut(s)	84, 87, 230, 400
BlsI	GCNGC	4 cut(s)	85, 88, 231, 401
Bme18I	GGWCC	2 cut(s)	95, 324
BmgT120I	GGNCC	5 cut(s)	95, 105, 106, 324, 356
BmiI	GGNNCC	4 cut(s)	58, 107, 325, 414
BmsI	GCATC	2 cut(s)	277, 481
BpiI	GAAGAC	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaJI	CCNNGG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	95, 241, 386
BsgI	GTGCAG	2 cut(s)	315, 385
BshFI	GGCC	3 cut(s)	107, 210, 357
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	107, 210, 357
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	2 cut(s)	60, 87
BspANI	GGCC	3 cut(s)	107, 210, 357
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	4 cut(s)	58, 107, 325, 414
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	40, 227
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	99, 162, 318
BstDSI	CCRYGG	1 cut(s)	335
BstEII	GGTNACC	1 cut(s)	505
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	370
BstPI	GGTNACC	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	95, 241, 386
BstV2I	GAAGAC	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	107, 210, 357
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	5 cut(s)	95, 105, 106, 324, 356
CviAII	CATG	4 cut(s)	336, 367, 439, 447
CviJI	RGCY	5 cut(s)	86, 107, 210, 357, 399
CviKI_1	RGCY	5 cut(s)	86, 107, 210, 357, 399
DdeI	CTNAG	3 cut(s)	99, 162, 318
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	40, 227
EarI	CTCTTC	2 cut(s)	40, 227
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	95, 324
Eco81I	CCTNAGG	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	4 cut(s)	339, 370, 442, 450
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	4 cut(s)	335, 366, 438, 446
Fnu4HI	GCNGC	4 cut(s)	84, 87, 230, 400
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	84, 87, 230, 400
GluI	GCNGC	4 cut(s)	84, 87, 230, 400
HaeIII	GGCC	3 cut(s)	107, 210, 357
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	4 cut(s)	339, 370, 442, 450
HinfI	GANTC	4 cut(s)	28, 34, 68, 269
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	33, 39, 196, 274
Hpy188III	TCNNGA	4 cut(s)	136, 284, 317, 476
HpyAV	CCTTC	3 cut(s)	142, 166, 347
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	4, 10, 229, 290, 332, 402
HpyF3I	CTNAG	3 cut(s)	99, 162, 318
Hsp92II	CATG	4 cut(s)	339, 370, 442, 450
LpnPI	CCDG	6 cut(s)	103, 122, 330, 372, 384, 437
Lsp1109I	GCAGC	3 cut(s)	95, 241, 386
LweI	GCATC	2 cut(s)	277, 481
MaeIII	GTNAC	4 cut(s)	154, 281, 476, 505
MboII	GAAGA	3 cut(s)	57, 124, 214
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	177, 262, 417
MlyI	GAGTC	2 cut(s)	37, 263
MnlI	CCTC	8 cut(s)	41, 47, 132, 138, 178, 311, 313, 337
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	335
NlaIII	CATG	4 cut(s)	339, 370, 442, 450
NlaIV	GGNNCC	4 cut(s)	58, 107, 325, 414
NmuCI	GTSAC	2 cut(s)	281, 476
NspI	RCATGY	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	34, 68
PkrI	GCNGC	4 cut(s)	85, 88, 231, 401
PleI	GAGTC	2 cut(s)	36, 263
PpsI	GAGTC	2 cut(s)	36, 263
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	58, 107, 325, 414
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	5 cut(s)	95, 105, 106, 324, 356
PspPPI	RGGWCCY	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	84, 87, 230, 400
Sau96I	GGNCC	5 cut(s)	95, 105, 106, 324, 356
SchI	GAGTC	2 cut(s)	37, 263
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	1 cut(s)	329
SfaNI	GCATC	2 cut(s)	277, 481
SfcI	CTRYAG	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	95, 324
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	177, 262, 417
SsiI	CCGC	2 cut(s)	60, 87
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	177, 262, 417
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	34, 68
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	281, 476
TseI	GCWGC	3 cut(s)	83, 229, 399
Tsp45I	GTSAC	2 cut(s)	281, 476
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	95, 324
XagI	CCTNNNNNAGG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.