Rh7BG302900

UPF0047 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010467
Physical Location & Seq
Forward (+)
28722980 .. 28727203
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG302900.1

Sequence Viewer

Length: 567 bp
ATGCAAAGCTCACTGTCGTTCCTCTCTGTGGCGAAGCCCCTCTCAGTCTCATCTCCGGTTCGCATCAACTGTTCATTGTTCACCGCCCCAAGCACCACCGACCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCCCAGAGAAGAGGCTGCCACCTCATCACCCCTAAGATAATGAAGGAAATCGGGCAGGACTTGTCTGGATTCAACTGCGGACTTGCTCACCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTCTGATGTTCGTACCGACACAGAGACATTCCTCAATAGGGTAGTTCCTGAGGGGGCATCTGCACCATGGAGACATACGCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGTATGTGAAACCAGTTATTTAAACTACAGTAGTTTCCTGCTTGTTAAGAGCTGCATTTCTCCACGTTGTTATCTTCATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0047

Protein Analysis

188

Amino Acids

20.64

Weight (kDa)

8.18

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 62 - 161 8.3e-34 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 2 cut(s) 84, 237
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 28, 337
AgsI TTSAA 3 cut(s) 111, 232, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 4 cut(s) 9, 119, 463, 534
AluI AGCT 4 cut(s) 9, 119, 463, 534
Alw26I GTCTC 3 cut(s) 52, 317, 364
AoxI GGCC 2 cut(s) 135, 385
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 4 cut(s) 116, 174, 429, 534
AspS9I GGNCC 4 cut(s) 125, 135, 136, 386
AsuHPI GGTGA 3 cut(s) 73, 178, 239
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 4 cut(s) 128, 161, 416, 521
BcoDI GTCTC 3 cut(s) 52, 317, 364
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 4 cut(s) 117, 175, 430, 535
BlsI GCNGC 4 cut(s) 118, 176, 431, 536
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 4 cut(s) 125, 135, 136, 386
BmiI GGNNCC 2 cut(s) 127, 137
BmsI GCATC 2 cut(s) 72, 365
BpiI GAAGAC 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 55, 122
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 337
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 495
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 28, 337
BseMII CTCAG 2 cut(s) 57, 339
BseNI ACTGG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 4 cut(s) 128, 161, 416, 521
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 137, 387
BsiSI CCGG 3 cut(s) 56, 123, 401
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 28, 337
BsmAI GTCTC 3 cut(s) 52, 317, 364
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 137, 387
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 2 cut(s) 84, 237
BspANI GGCC 2 cut(s) 137, 387
BspCNI CTCAG 2 cut(s) 56, 340
BspLI GGNNCC 2 cut(s) 127, 137
BspMI ACCTGC 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 495
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 4 cut(s) 15, 71, 438, 512
Bst6I CTCTTC 2 cut(s) 163, 257
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 4 cut(s) 43, 192, 348, 564
BstDSI CCRYGG 1 cut(s) 365
BstMAI GTCTC 3 cut(s) 52, 317, 364
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 4 cut(s) 128, 161, 416, 521
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 137, 387
BtgI CCRYGG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 4 cut(s) 125, 135, 136, 386
Csp6I GTAC 1 cut(s) 312
CviAII CATG 3 cut(s) 366, 397, 469
CviJI RGCY 9 cut(s) 9, 37, 119, 137, 174, 387, 429, 463, 534
CviKI_1 RGCY 9 cut(s) 9, 37, 119, 137, 174, 387, 429, 463, 534
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 4 cut(s) 43, 192, 348, 564
DraI TTTAAA 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 163, 257
EarI CTCTTC 2 cut(s) 163, 257
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 3 cut(s) 369, 400, 472
FaiI YATR 8 cut(s) 149, 297, 367, 375, 398, 470, 487, 561
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 365, 396, 468
Fnu4HI GCNGC 4 cut(s) 117, 175, 430, 535
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 117, 175, 430, 535
GluI GCNGC 4 cut(s) 117, 175, 430, 535
HaeIII GGCC 2 cut(s) 137, 387
HapII CCGG 3 cut(s) 56, 123, 401
Hin1II CATG 3 cut(s) 369, 400, 472
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 228, 299, 442
HpaII CCGG 3 cut(s) 56, 123, 401
HphI GGTGA 3 cut(s) 73, 178, 239
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 225, 347
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 196, 377
HpyCH4III ACNGT 4 cut(s) 15, 71, 438, 512
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 4 cut(s) 4, 259, 362, 537
HpyF3I CTNAG 4 cut(s) 43, 192, 348, 564
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 3 cut(s) 369, 400, 472
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Lsp1109I GCAGC 4 cut(s) 128, 161, 416, 521
LweI GCATC 2 cut(s) 72, 365
MaeII ACGT 1 cut(s) 547
MboII GAAGA 4 cut(s) 154, 180, 244, 548
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 8 cut(s) 32, 50, 164, 168, 191, 260, 341, 343
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 4 cut(s) 411, 465, 503, 528
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 3 cut(s) 56, 123, 401
NaeI GCCGGC 1 cut(s) 402
NcoI CCATGG 1 cut(s) 365
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 369, 400, 472
NlaIV GGNNCC 2 cut(s) 127, 137
NspI RCATGY 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 267
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 228, 442
PkrI GCNGC 4 cut(s) 118, 176, 431, 536
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 127, 137
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 125, 135, 136, 386
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 4 cut(s) 411, 465, 503, 528
SatI GCNGC 4 cut(s) 117, 175, 430, 535
Sau96I GGNCC 4 cut(s) 125, 135, 136, 386
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 139
SetI ASST 8 cut(s) 11, 121, 183, 252, 465, 486, 536, 550
SfaNI GCATC 2 cut(s) 72, 365
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 1 cut(s) 106
SsiI CCGC 2 cut(s) 84, 237
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 4 cut(s) 15, 71, 438, 512
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 440
TasI AATT 1 cut(s) 106
TfiI GAWTC 2 cut(s) 228, 442
Tru1I TTAA 4 cut(s) 411, 465, 503, 528
Tru9I TTAA 4 cut(s) 411, 465, 503, 528
TscAI CASTG 1 cut(s) 18
TseI GCWGC 4 cut(s) 116, 174, 429, 534
TspDTI ATGAA 3 cut(s) 63, 215, 548
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.