Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Forward (+)

7846459 .. 7847836

Gene Structure 1378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACGTTTTTGATGGACTTCCTGACCCGATCATCGTCGACATCTTGAACAAAGTCGGTGACGTCAAAACCTTACTTCGATGCAGCTCTCTTTCAAAAAGATTTAACTCGCTTGTCCCTCAGTCTGAGTCACTCACCCTCCGACTCGACCACTCAGTATCCGATTCACCCGTCGTCACAAGCATTTTCCGATCTTTATTCAACGGTCTAGTTTCTCTTTTATCCAAACCGGCTAAACCAATCACAATAACCACCCTCTCTCCGAGTCTCCCCTTCAAGATTCTCTCCCGGTTCGACCGGATTCGAAATCTGGACGTAGAGCTTCCCGGCGGCGATGTAAAGCTCGAGAAAGGTGCAGCCGTTAAGTGGAAAGCTGAGTTTGGGAAAACACTCAAAAGCTGCGTCATCGTCGCGTTCCGTTCCGCCGGTACCGTGTCTTCTCCCGTCGCCGTAGAAGGTGAGTCAGACGCCGAGTTCGTGACTGGACTGAAGACGCGCGTGGTGTGGACTATAAGCGCGTTGATGGCTGCTTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCATGAGGAGATAGAAAGTTTAGTTATGCGTGACAAAGAAAGAGAAGGGACGGTGGTGATGAACGAGGAAGGGCTTAAAGAGTTAAGAAATACGGAGGCGCGTGTGGAAGACGAGGAGCGCGTGGTAAAAAATAAGAGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTAAACTTAAGAGTGGTATCTGTTTAGAATCTGCTACGCTTGTGATTGTTCGACCGAGCGGAGCGGATTTTGAAGTTGGAGATGATGCTGAGTTGGCGACGGAGGCTTTCGTCGGAGATTGTATGTACGGTGAAGCGGTCGTCGCTTTGTTAAAGTGCAAGAAGAACGCTTTAGAGATGAATTCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

314

Amino Acids

34.5

Weight (kDa)

6.49

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccBSI	CCGCTC	2 cut(s)	813, 818
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
AciI	CCGC	5 cut(s)	330, 423, 813, 818, 890
AcsI	RAATTY	1 cut(s)	934
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	2 cut(s)	63, 468
AfaI	GTAC	2 cut(s)	430, 881
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	5 cut(s)	49, 96, 202, 277, 827
AluBI	AGCT	5 cut(s)	87, 322, 343, 374, 399
AluI	AGCT	5 cut(s)	87, 322, 343, 374, 399
Alw26I	GTCTC	4 cut(s)	272, 540, 733, 756
Ama87I	CYCGRG	2 cut(s)	344, 718
ApeKI	GCWGC	4 cut(s)	84, 356, 399, 527
ApoI	RAATTY	1 cut(s)	934
ArsI	GACNNNNNNTTYG	4 cut(s)	387, 419, 458, 490
Asp718I	GGTACC	1 cut(s)	428
AspLEI	GCGC	5 cut(s)	498, 518, 670, 690, 748
AsuC2I	CCSGG	2 cut(s)	289, 327
AsuHPI	GGTGA	6 cut(s)	71, 127, 159, 470, 637, 896
AsuII	TTCGAA	1 cut(s)	304
AvaI	CYCGRG	2 cut(s)	344, 718
BanI	GGYRCC	1 cut(s)	428
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
BbsI	GAAGAC	3 cut(s)	429, 497, 684
BbvI	GCAGC	4 cut(s)	96, 368, 386, 514
BccI	CCATC	2 cut(s)	8, 517
BceAI	ACGGC	3 cut(s)	344, 434, 733
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	289, 327
BcoDI	GTCTC	4 cut(s)	272, 540, 733, 756
BfaI	CTAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	761
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	5 cut(s)	85, 331, 357, 400, 528
BlsI	GCNGC	5 cut(s)	86, 332, 358, 401, 529
Bme1390I	CCNGG	2 cut(s)	289, 327
BmeT110I	CYCGRG	2 cut(s)	344, 718
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	289, 327
BmsI	GCATC	2 cut(s)	71, 829
BpiI	GAAGAC	3 cut(s)	429, 497, 684
Bpu14I	TTCGAA	1 cut(s)	304
BpuMI	CCSGG	2 cut(s)	289, 327
BsaHI	GRCGYC	2 cut(s)	63, 468
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	2 cut(s)	229, 425
Bse1I	ACTGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	5 cut(s)	117, 134, 168, 366, 834
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	3 cut(s)	590, 698, 721
BseXI	GCAGC	4 cut(s)	96, 368, 386, 514
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
Bsh1285I	CGRYCG	3 cut(s)	298, 809, 894
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	3 cut(s)	298, 809, 894
BsiHKCI	CYCGRG	2 cut(s)	344, 718
BsiSI	CCGG	5 cut(s)	230, 289, 298, 327, 426
BslFI	GGGAC	3 cut(s)	101, 631, 701
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	4 cut(s)	272, 540, 733, 756
BsmBI	CGTCTC	2 cut(s)	540, 756
BsmFI	GGGAC	3 cut(s)	101, 631, 701
BsoBI	CYCGRG	2 cut(s)	344, 718
Bsp119I	TTCGAA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	30, 191
BspACI	CCGC	5 cut(s)	330, 423, 813, 818, 890
BspCNI	CTCAG	5 cut(s)	118, 133, 167, 367, 835
BspFNI	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
BspLI	GGNNCC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	761
BsrBI	CCGCTC	2 cut(s)	813, 818
BsrFI	RCCGGY	2 cut(s)	229, 425
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	2 cut(s)	229, 425
BssMI	GATC	2 cut(s)	30, 191
BssNI	GRCGYC	2 cut(s)	63, 468
Bst4CI	ACNGT	4 cut(s)	206, 433, 622, 884
BstACI	GRCGYC	2 cut(s)	63, 468
BstAFI	CTTAAG	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	120, 126, 154, 375, 843
BstF5I	GGATG	1 cut(s)	735
BstFNI	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
BstHHI	GCGC	5 cut(s)	498, 518, 670, 690, 748
BstKTI	GATC	2 cut(s)	33, 194
BstMAI	GTCTC	4 cut(s)	272, 540, 733, 756
BstMBI	GATC	2 cut(s)	30, 191
BstMCI	CGRYCG	3 cut(s)	298, 809, 894
BstMWI	GCNNNNNNNGC	4 cut(s)	524, 848, 857, 896
BstSCI	CCNGG	2 cut(s)	287, 325
BstUI	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
BstV1I	GCAGC	4 cut(s)	96, 368, 386, 514
BstV2I	GAAGAC	3 cut(s)	429, 497, 684
BsuI	GTATCC	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	735
CfoI	GCGC	5 cut(s)	498, 518, 670, 690, 748
Cfr10I	RCCGGY	2 cut(s)	229, 425
CseI	GACGC	3 cut(s)	391, 476, 502
Csp6I	GTAC	2 cut(s)	429, 880
CviAII	CATG	1 cut(s)	572
CviQI	GTAC	2 cut(s)	429, 880
DdeI	CTNAG	5 cut(s)	120, 126, 154, 375, 843
DpnI	GATC	2 cut(s)	32, 193
DpnII	GATC	2 cut(s)	30, 191
EciI	GGCGGA	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	2 cut(s)	344, 718
EcoRI	GAATTC	1 cut(s)	934
Esp3I	CGTCTC	2 cut(s)	540, 756
FaeI	CATG	1 cut(s)	575
FaiI	YATR	5 cut(s)	512, 573, 596, 737, 878
FaqI	GGGAC	3 cut(s)	101, 631, 701
FatI	CATG	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	85, 331, 357, 400, 528
FokI	GGATG	1 cut(s)	742
Fsp4HI	GCNGC	5 cut(s)	85, 331, 357, 400, 528
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	5 cut(s)	497, 517, 669, 689, 747
GluI	GCNGC	5 cut(s)	85, 331, 357, 400, 528
HapII	CCGG	5 cut(s)	230, 289, 298, 327, 426
HgaI	GACGC	3 cut(s)	391, 476, 502
HhaI	GCGC	5 cut(s)	498, 518, 670, 690, 748
Hin1I	GRCGYC	2 cut(s)	63, 468
Hin1II	CATG	1 cut(s)	575
Hin6I	GCGC	5 cut(s)	496, 516, 668, 688, 746
HinP1I	GCGC	5 cut(s)	496, 516, 668, 688, 746
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	8 cut(s)	128, 144, 164, 265, 280, 301, 461, 782
HpaII	CCGG	5 cut(s)	230, 289, 298, 327, 426
HphI	GGTGA	6 cut(s)	71, 127, 159, 470, 637, 896
Hpy166II	GTNNAC	2 cut(s)	40, 507
Hpy188I	TCNGA	7 cut(s)	127, 143, 163, 191, 264, 466, 869
Hpy188III	TCNNGA	8 cut(s)	23, 46, 277, 311, 346, 478, 562, 718
Hpy8I	GTNNAC	2 cut(s)	40, 507
Hpy99I	CGWCG	7 cut(s)	41, 176, 413, 449, 856, 869, 899
HpyAV	CCTTC	5 cut(s)	283, 449, 559, 608, 632
HpyCH4III	ACNGT	4 cut(s)	206, 433, 622, 884
HpyCH4IV	ACGT	3 cut(s)	6, 63, 315
HpyCH4V	TGCA	3 cut(s)	84, 356, 912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	524, 848, 857, 896
HpyF3I	CTNAG	5 cut(s)	120, 126, 154, 375, 843
HpySE526I	ACGT	3 cut(s)	6, 63, 315
Hsp92I	GRCGYC	2 cut(s)	63, 468
Hsp92II	CATG	1 cut(s)	575
HspAI	GCGC	5 cut(s)	496, 516, 668, 688, 746
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	30, 191
LmnI	GCTCC	3 cut(s)	568, 685, 815
LpnPI	CCDG	8 cut(s)	36, 243, 296, 302, 311, 340, 439, 468
Lsp1109I	GCAGC	4 cut(s)	96, 368, 386, 514
LweI	GCATC	2 cut(s)	71, 829
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	3 cut(s)	6, 63, 315
MaeIII	GTNAC	5 cut(s)	59, 129, 175, 478, 599
MalI	GATC	2 cut(s)	32, 193
MbiI	CCGCTC	2 cut(s)	813, 818
MboI	GATC	2 cut(s)	30, 191
MboII	GAAGA	4 cut(s)	429, 502, 689, 928
MluCI	AATT	1 cut(s)	934
MlyI	GAGTC	4 cut(s)	137, 138, 274, 470
MmeI	TCCRAC	3 cut(s)	166, 811, 847
MseI	TTAA	8 cut(s)	105, 363, 645, 653, 756, 762, 905, 943
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	5 cut(s)	230, 289, 298, 327, 426
MspR9I	CCNGG	2 cut(s)	289, 327
MvnI	CGCG	7 cut(s)	413, 496, 498, 518, 670, 690, 746
MwoI	GCNNNNNNNGC	4 cut(s)	524, 848, 857, 896
NciI	CCSGG	2 cut(s)	289, 327
NdeII	GATC	2 cut(s)	30, 191
NlaIII	CATG	1 cut(s)	575
NlaIV	GGNNCC	1 cut(s)	430
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	5 cut(s)	59, 129, 175, 478, 599
NspV	TTCGAA	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 687
PfeI	GAWTC	4 cut(s)	164, 280, 301, 782
PkrI	GCNGC	5 cut(s)	86, 332, 358, 401, 529
PleI	GAGTC	4 cut(s)	136, 138, 273, 469
PpsI	GAGTC	4 cut(s)	136, 138, 273, 469
PspN4I	GGNNCC	1 cut(s)	430
RsaI	GTAC	2 cut(s)	430, 881
RsaNI	GTAC	2 cut(s)	429, 880
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	8 cut(s)	105, 363, 645, 653, 756, 762, 905, 943
SatI	GCNGC	5 cut(s)	85, 331, 357, 400, 528
Sau3AI	GATC	2 cut(s)	30, 191
SchI	GAGTC	4 cut(s)	137, 138, 274, 470
ScrFI	CCNGG	2 cut(s)	289, 327
SfaNI	GCATC	2 cut(s)	71, 829
Sfr274I	CTCGAG	1 cut(s)	344
SfuI	TTCGAA	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	344, 761
SmoI	CTYRAG	2 cut(s)	344, 761
Sse9I	AATT	1 cut(s)	934
SsiI	CCGC	5 cut(s)	330, 423, 813, 818, 890
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	287, 325
TaaI	ACNGT	4 cut(s)	206, 433, 622, 884
TaiI	ACGT	3 cut(s)	9, 66, 318
TaqI	TCGA	7 cut(s)	39, 79, 147, 294, 304, 345, 805
TaqII	GACCGA	1 cut(s)	823
TasI	AATT	1 cut(s)	934
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	4 cut(s)	164, 280, 301, 782
Tru1I	TTAA	8 cut(s)	105, 363, 645, 653, 756, 762, 905, 943
Tru9I	TTAA	8 cut(s)	105, 363, 645, 653, 756, 762, 905, 943
TseFI	GTSAC	5 cut(s)	59, 129, 175, 478, 599
TseI	GCWGC	4 cut(s)	84, 356, 399, 527
Tsp45I	GTSAC	5 cut(s)	59, 129, 175, 478, 599
TspDTI	ATGAA	1 cut(s)	644
TspGWI	ACGGA	3 cut(s)	407, 677, 869
Vha464I	CTTAAG	1 cut(s)	761
XapI	RAATTY	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.